PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028121395.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 324aa MW: 36625 Da PI: 7.125

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028121395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.7	3.6e-20	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+v+++G g+W++ +++ g++R++k+c++rw +yl XP_028121395.1 16 KGPWTPEEDQKLLDYVQLHGRGSWRALPKHAGLNRCGKSCRLRWTNYL 63 79********************************************97 PP
2	Myb_DNA-binding	53.2	7e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + eE++++++++ lG++ W++Ia +++ gRt++++k++w+++l XP_028121395.1 69 RGKYSDEEEQIIINLHSVLGNK-WSKIAFHLP-GRTDNEIKNHWNTHL 114 899*****************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MVRVPCCDEN SGLIKKGPWT PEEDQKLLDY VQLHGRGSWR ALPKHAGLNR CGKSCRLRWT 60 NYLRPDIKRG KYSDEEEQII INLHSVLGNK WSKIAFHLPG RTDNEIKNHW NTHLRKKLLQ 120 RGIDPQTHKP ISDLNLFANL AHLLYASNLT NASNLTNLMN PWDNNNAFRQ HSGATTQLAK 180 IQLLQIMMQV INTTTPLPNI AQTQTSLSGH CNKNNTTIPQ QAPLEFPNLD VNVNSQQQFN 240 DFADIDKAIA WFGDGFQPQV VGANCNNKNS DCHTQSSESA LPSINQGESK IDPTYPSTQS 300 PTSNNFEAWE KLLDDEGHSW EDIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	7e-79	MYB family protein