PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028118213.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 608aa    MW: 68209.9 Da    PI: 6.8519
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028118213.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-192883156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++  ++t++q+++Le++F+++++p+ ++r++L+++lgL+ +q+k+WFqN+R++ k
  XP_028118213.1 28 KKHYYRHTAYQTQQLEAFFKECQHPDDNQRRQLSRELGLESKQIKFWFQNKRTQTK 83
                    5777899*********************************************9987 PP
2START125.66.4e-402514873205
                     HHHHHHHHHHHHHHC-TT-EEEE.............EXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT- CS
           START   3 aeeaaqelvkkalaeepgWvkss.............esengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWd 73 
                     a +a+ el+++  ++ep+W kss               + +d + +                   ++e +++sgvv+m ++ l++ +ld++ +W 
  XP_028118213.1 251 AVSAMGELMRLLRVNEPVWIKSSspvdhdgdsrrssYLLHRDSYNK------LfprsnhfksstARMESSKDSGVVPMSAVHLLNMFLDSN-KWM 338
                     678999*****************9*777764443322233333333......26666669999999*************************.888 PP

                     TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--......-TTSEE-EESSEEE CS
           START  74 etla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.....sssvvRaellpSgi 152
                       ++    ka t+ev+++       g lqlm+ ++  lsplv+ R+f+f+Ry+r+ +a +w+ vdvS + + ++ +       s  R+ +lpSg+
  XP_028118213.1 339 DLFPtivtKARTIEVVDTRmlgdqaGSLQLMYEQMHILSPLVApREFYFLRYCREVEASVWMMVDVSYEYDCSKLSkdldpRGSPPRSWRLPSGC 433
                     88888888**********9***********************99***********************7644333222334455778********* PP

                     EEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 153 liepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     ++++k+ng ++vtwvehv++++++  h l+r lv  gla ga++w atl+r  e
  XP_028118213.1 434 MLQDKPNGCCEVTWVEHVEVDDKSQtHRLYRDLVCGGLAYGAQRWIATLHRMSE 487
                     **********************9999************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
MMDFGYGSNN GTGSGDEQEA GSSSRKNKKH YYRHTAYQTQ QLEAFFKECQ HPDDNQRRQL  60
SRELGLESKQ IKFWFQNKRT QTKAQNERAD NNALKVENEK IQCENLAIRE ALKNVTCPNC  120
GGPPFGEEER QLNVQKLKMQ NSHLKQEYER MSHFIANILG KPVAQIQSLC SMDFQSQTDI  180
LGFSASQGLL GGSSSNSTDQ LQHQFQQLDD HIGNSNNNNN STMQQQMQYP LMNDYGNNKF  240
EMEKMAMIET AVSAMGELMR LLRVNEPVWI KSSSPVDHDG DSRRSSYLLH RDSYNKLFPR  300
SNHFKSSTAR MESSKDSGVV PMSAVHLLNM FLDSNKWMDL FPTIVTKART IEVVDTRMLG  360
DQAGSLQLMY EQMHILSPLV APREFYFLRY CREVEASVWM MVDVSYEYDC SKLSKDLDPR  420
GSPPRSWRLP SGCMLQDKPN GCCEVTWVEH VEVDDKSQTH RLYRDLVCGG LAYGAQRWIA  480
TLHRMSERLA YSLGAALSRH ELGGAKELAV AVDDDLSSAT SDGVAMSSSA VELQVGGVLE  540
FGGELLAMVF SGGVASGVQQ HRRCVALGVQ QLRCGSWCGE YVVFRRVVGS REGVGVGRRV  600
GVGGVGLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17320.11e-106HD-ZIP family protein