PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028118052.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 338aa MW: 37602.4 Da PI: 6.4398

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028118052.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.4	3.3e-18	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd+++++G g+W++ ++ g++R++k+c++rw +yl XP_028118052.1 15 KGPWTPEEDQKLVDCIQKHGLGSWSAFPKLAGLNRCGKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	53.5	5.6e-17	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++ + lG++ W++Ia +++ gRt++++k++w+++l XP_028118052.1 68 RGKFSQEEEQTILHFHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MGRSPSCDEK YELKKGPWTP EEDQKLVDCI QKHGLGSWSA FPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSQEEEQTIL HFHSILGNKW SAIATHLPGR TDNEIKNFWN THLKKKLIQM 120 GFDPMTHQPR ADIFANLPHL IAMANLKDLI NQPLLEADQL ANLQYLQHLL QFADSSSVTS 180 SPYSQNSITD HIDALSLWNS IPPLKQNPVL NSSYSTQVLQ NQALFSIENA TSSQPLHHNN 240 PIITSLNIPV SDPQVPFCFQ TPLTSGINTA MISHEDDKPP NSPWLLPSPT SSGTLPISEV 300 SISNPGDGCS VSSYGGGGAS SSCWTELFFE EPFMHEIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-105	MYB family protein