PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116987.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 599aa MW: 65818.8 Da PI: 6.5525

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116987.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.4	0.00099	115	134	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk F++ +L H+r XP_028116987.1 115 TCSLCGKNFPSMKSLFGHMR 134 6******************8 PP
2	zf-C2H2	12	0.00065	430	452	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F+++ L H ++H XP_028116987.1 430 YKCSTCDKCFPTHQALGGHRSSH 452 9***************9999998 PP
3	zf-C2H2	11.7	0.00082	507	527	1	21
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++Cgk Fs+ L H+r XP_028116987.1 507 HQCKICGKIFSTGQALGGHQR 527 79**********999999987 PP

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence
MEYDQENQSH PPIPKPSSGE GKLCIKLKIP SFEEGVVVVD HDQTGRSQKN DQPRVCNVCN 60 KWFSSGKALG GHMRVHVQPN KELSVKKLKP KKIHRQELLD LPEKTDTDNA IDSPTCSLCG 120 KNFPSMKSLF GHMRCHPERE WRGIQPPPPP AAAKNSSSSS SLSNFATTSE PRKVFDDEID 180 LDGAMAIPIR EIDLTKALPG WSVKARRGRR SLTASAVVRP TLEEEEEEEK LQDAVQDLMM 240 LAHGDSLDSE PSGLTHNKHR VDVSEATNSN SLTNKAEIED MNCVLESKNS PMKPRIDSPR 300 PVVRYPVKKL RIDERRPIDG GSNSNGMLVK ILNKGKRKAV FEAKYDPGKT VGLGHEWVNV 360 DWLGQEDDES DCKTSDGNTK PLMMMKSKKR RKKLKLRDLE SVQDAAPADQ VSIPIETATP 420 PPPPPPSDKY KCSTCDKCFP THQALGGHRS SHNKVKNSLT IDEPLDDQYQ YPPDATNPIG 480 QVDETKVEEG GGSSSKVAVA VAEIPNHQCK ICGKIFSTGQ ALGGHQRCHW YGTTSPAEAP 540 QPCQATSPGE ASETGRKFLG FDLNELPSIE DEEDGVEFGG QAGGYDYASS SHNSAEHGF

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence

MEYDQENQSH PPIPKPSSGE GKLCIKLKIP SFEEGVVVVD HDQTGRSQKN DQPRVCNVCN  60
KWFSSGKALG GHMRVHVQPN KELSVKKLKP KKIHRQELLD LPEKTDTDNA IDSPTCSLCG  120
KNFPSMKSLF GHMRCHPERE WRGIQPPPPP AAAKNSSSSS SLSNFATTSE PRKVFDDEID  180
LDGAMAIPIR EIDLTKALPG WSVKARRGRR SLTASAVVRP TLEEEEEEEK LQDAVQDLMM  240
LAHGDSLDSE PSGLTHNKHR VDVSEATNSN SLTNKAEIED MNCVLESKNS PMKPRIDSPR  300
PVVRYPVKKL RIDERRPIDG GSNSNGMLVK ILNKGKRKAV FEAKYDPGKT VGLGHEWVNV  360
DWLGQEDDES DCKTSDGNTK PLMMMKSKKR RKKLKLRDLE SVQDAAPADQ VSIPIETATP  420
PPPPPPSDKY KCSTCDKCFP THQALGGHRS SHNKVKNSLT IDEPLDDQYQ YPPDATNPIG  480
QVDETKVEEG GGSSSKVAVA VAEIPNHQCK ICGKIFSTGQ ALGGHQRCHW YGTTSPAEAP  540
QPCQATSPGE ASETGRKFLG FDLNELPSIE DEEDGVEFGG QAGGYDYASS SHNSAEHGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	392	KKRRK
2	388	393	KKRRKK
3	391	397	RKKLKLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56200.1	5e-20	C2H2 family protein