PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028116102.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 451aa MW: 49905.2 Da PI: 9.582

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028116102.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.1	5.6e-19	17	106	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLi+a+r+++ +lrrg l+ ++W++v++++ + +++ qC++k+e+l++ry+ +k+++ + + s++ +fd+++ XP_028116102.1 17 CWTQEETLALIDAYRDRWYALRRGYLRTADWDAVADAVvsrcPAVSPPKTSAQCRHKMEKLRQRYRTEKQRSLSFPGRFFSSWFFFDNMD 106 8*********************************998766677778999******************99889999****998 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MSTPTPEKPP RKFPTPCWTQ EETLALIDAY RDRWYALRRG YLRTADWDAV ADAVVSRCPA 60 VSPPKTSAQC RHKMEKLRQR YRTEKQRSLS FPGRFFSSWF FFDNMDSMAS GSSLAVGSKP 120 DAGNQVDSGV GGVLRIKNVG DRNSVESVFG SKNSKKVDGN SNPDLVLYQD KALCDRNSPP 180 LGFRANKIEG NSSPNTSSRV LNGYPSYVDD GSDDEEEDEE VEEDFGGGFR VRTPIDGKLV 240 PPVFRTKKLG KIHGNFGPNF DSNHFYSNGI EDGGGFWVKT PIDQEMVPPG FRPKKFSKVD 300 SNLNPNFGSA DGGFPVKMPG NRYSVPAGFR TKGYGKNGGN SCPNLVSRVS NGFDSGLGKK 360 SDGGGRGVKR ERGSISEIVS SIKLLGEGFL KMEKMKMEMA KEIEKMRMER EMKRSELILE 420 SQRQIVDAFV TVLVENKKKN ENTPPVAAPE T

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MSTPTPEKPP RKFPTPCWTQ EETLALIDAY RDRWYALRRG YLRTADWDAV ADAVVSRCPA  60
VSPPKTSAQC RHKMEKLRQR YRTEKQRSLS FPGRFFSSWF FFDNMDSMAS GSSLAVGSKP  120
DAGNQVDSGV GGVLRIKNVG DRNSVESVFG SKNSKKVDGN SNPDLVLYQD KALCDRNSPP  180
LGFRANKIEG NSSPNTSSRV LNGYPSYVDD GSDDEEEDEE VEEDFGGGFR VRTPIDGKLV  240
PPVFRTKKLG KIHGNFGPNF DSNHFYSNGI EDGGGFWVKT PIDQEMVPPG FRPKKFSKVD  300
SNLNPNFGSA DGGFPVKMPG NRYSVPAGFR TKGYGKNGGN SCPNLVSRVS NGFDSGLGKK  360
SDGGGRGVKR ERGSISEIVS SIKLLGEGFL KMEKMKMEMA KEIEKMRMER EMKRSELILE  420
SQRQIVDAFV TVLVENKKKN ENTPPVAAPE T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-26	Trihelix family protein