PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028115944.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 301aa MW: 33971.4 Da PI: 8.2257

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028115944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3.1e-18	135	189	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k XP_028115944.1 135 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKRLGLRARQVEVWFQNRRARTK 189 788899***********************************************98 PP
2	HD-ZIP_I/II	126.2	1.5e-40	135	224	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +l XP_028115944.1 135 RKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKRLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEDNRRLQKEVQELR-AL 224 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence
MVDKEDLVLA LSLSFPENRS SLHLNLMPSA VSSSSPPLSA PFNPHKTSWN DIFPSFDRNS 60 ESCRVDARSF LKGIDVNRTP STVDCEEEAG VSSPNSTISS VSGKRSEREA IGDEHEIERS 120 CSRGISDEED GDNSRKKLRL SKDQSAVLEE SFKEHNTLNP KQKLALAKRL GLRARQVEVW 180 FQNRRARTKL KQTEVDCEFL KRCCENLTED NRRLQKEVQE LRALKLSPQF YMQMTPPTTL 240 TMCPSCERVA VPPSSSSAPA PPPLDHRRSH PQRPIPINPW ATPIPIPHRP LDRNIFVDPR 300 A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	140	SRKKLRL
2	184	192	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	4e-89	HD-ZIP family protein