PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114401.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 367aa MW: 40947.5 Da PI: 7.6767

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ +++ g+ R++k+c++rw +yl XP_028114401.1 14 KGPWTPEEDQKLLAYIEDHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	51.9	1.7e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l XP_028114401.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIATYLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE DHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATYLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPVTHKPKS EALGPGQLKD AANLSHMAQW ESARLEAEAR LVRESKLHVI NPFHSSSAAA 180 PPHHHHHHHH LAPLPPPPPL CLDVLTAWKG SWLKTPKDNA IAGNIFAALE SPTSTLKFGE 240 NPFPIINAGL FGNNSVAVIE QLVNKSNNFT EMKERIDSAA MEFHDMVGYS NDDVYIAETL 300 KNANNANILI PNFMDGLTDL LLENSNEIVN SENVGGSCYS VDFEENKNYW NSILSVVNCS 360 PSGSPVF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLAYIE DHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIATYLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKS EALGPGQLKD AANLSHMAQW ESARLEAEAR LVRESKLHVI NPFHSSSAAA  180
PPHHHHHHHH LAPLPPPPPL CLDVLTAWKG SWLKTPKDNA IAGNIFAALE SPTSTLKFGE  240
NPFPIINAGL FGNNSVAVIE QLVNKSNNFT EMKERIDSAA MEFHDMVGYS NDDVYIAETL  300
KNANNANILI PNFMDGLTDL LLENSNEIVN SENVGGSCYS VDFEENKNYW NSILSVVNCS  360
PSGSPVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-111	MYB family protein