PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028112941.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 381aa MW: 42106.8 Da PI: 5.0528

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028112941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.4	1.2e-07	18	55	4	39
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39 r+C+++++ + +C++++ +lC+ C +H H++ XP_028112941.1 18 RVCDTCQSAGCTVYCRTDSAYLCAACDARIHAAnrHER 55 79*****************************4455986 PP
2	zf-B_box	27.9	4.8e-09	56	100	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++++ C+ + lC C +H H ++p XP_028112941.1 56 VWVCEACERAPASFVCKADAASLCTACDADIHAAnplarrHHRIP 100 689*****************************6678888866665 PP
3	CCT	70.3	4.7e-24	311	354	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_028112941.1 311 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 354 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MLNLKEESSS IGKTNWARVC DTCQSAGCTV YCRTDSAYLC AACDARIHAA NRHERVWVCE 60 ACERAPASFV CKADAASLCT ACDADIHAAN PLARRHHRIP ILPLPVSLYG NAEPQATATA 120 DPDDGFLAPE ADRTIDEEDD DNDDEAASWL LVNPGKSNNN NNNSQNNING FLFGGEVVDE 180 YLDLAEYNTC QENQFADHYN VAQKSYGGDS VVPVQCGEGK GLVLQQQQQQ QQQQTHNYQL 240 EMMEFETSKS GYGYPASVSH SVSVSSMDVG VVPESTMSDV SISHPRPPKG TIDLFSSPPL 300 HMPPQLTPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDAEVEV 360 DQMFSTSLMA AEGGYGIVPS F

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MLNLKEESSS IGKTNWARVC DTCQSAGCTV YCRTDSAYLC AACDARIHAA NRHERVWVCE  60
ACERAPASFV CKADAASLCT ACDADIHAAN PLARRHHRIP ILPLPVSLYG NAEPQATATA  120
DPDDGFLAPE ADRTIDEEDD DNDDEAASWL LVNPGKSNNN NNNSQNNING FLFGGEVVDE  180
YLDLAEYNTC QENQFADHYN VAQKSYGGDS VVPVQCGEGK GLVLQQQQQQ QQQQTHNYQL  240
EMMEFETSKS GYGYPASVSH SVSVSSMDVG VVPESTMSDV SISHPRPPKG TIDLFSSPPL  300
HMPPQLTPMD REARVLRYRE KKKTRKFEKT IRYASRKAYA ETRPRIKGRF AKRTDAEVEV  360
DQMFSTSLMA AEGGYGIVPS F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-111	CO-like family protein