PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028112923.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GATA

Protein Properties

Length: 538aa MW: 59677 Da PI: 7.5992

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028112923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.4	6.1e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_028112923.1 7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41 **************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RAEPDEFEDY 60 RVSRVKSISI KNKEAKLLKR KQNHDNAVVG WVAPDYNQGS RKGLDEDTSN RSSSGSAISN 120 SESCVQFGSL DASDMTGPAQ SIVWDTMVPS RKRTCVNRPK QSPVEKLTKD LYTILHEQQS 180 SHFSGSSEED LLFESDTPMV SVEIGHGSVL IRHPSSIARE EESEASSLSV DNKPHRLNEA 240 YSHLTALPVH IYNKCADFPS PGIEKNKRPA GQGMQQEQIK RDKAQHEKLQ ILGNHNSPLR 300 YIDLKDVLNF DEFASHLTNE EQQQLLKYLP SIDTDSLKSM FASPQFDENL SSFQKLLGEG 360 VFDLSFSGVK AEDCKILKRL ALCNLSKSKW VEQYNLLKDV KRKSSNRGPV VPGPNAIASA 420 NPAHVKRSHD GSFQNYPGAK TTMKSPKRVM KSSYEHKELV DNDVSCFSPR SLFALPPDSS 480 SLMLDSLQFM GESSDQDLLL DVPSNSSFPQ AELLLPTSSF GAQASTSSSS IHPQLIRP

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLVNYTPLHA RAEPDEFEDY  60
RVSRVKSISI KNKEAKLLKR KQNHDNAVVG WVAPDYNQGS RKGLDEDTSN RSSSGSAISN  120
SESCVQFGSL DASDMTGPAQ SIVWDTMVPS RKRTCVNRPK QSPVEKLTKD LYTILHEQQS  180
SHFSGSSEED LLFESDTPMV SVEIGHGSVL IRHPSSIARE EESEASSLSV DNKPHRLNEA  240
YSHLTALPVH IYNKCADFPS PGIEKNKRPA GQGMQQEQIK RDKAQHEKLQ ILGNHNSPLR  300
YIDLKDVLNF DEFASHLTNE EQQQLLKYLP SIDTDSLKSM FASPQFDENL SSFQKLLGEG  360
VFDLSFSGVK AEDCKILKRL ALCNLSKSKW VEQYNLLKDV KRKSSNRGPV VPGPNAIASA  420
NPAHVKRSHD GSFQNYPGAK TTMKSPKRVM KSSYEHKELV DNDVSCFSPR SLFALPPDSS  480
SLMLDSLQFM GESSDQDLLL DVPSNSSFPQ AELLLPTSSF GAQASTSSSS IHPQLIRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-156	GATA family protein