PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028112714.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 349aa MW: 38933.6 Da PI: 6.3594

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028112714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.3	7.4e-18	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+d++++ G g+W++ ++ g++R++k+c++rw +yl XP_028112714.1 16 KGPWTPEEDRKLIDYIERNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 63 79********************************************97 PP
2	Myb_DNA-binding	56	8.9e-18	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE+++++++++ lG++ W++Ia +++ gRt++++k++w+++l XP_028112714.1 69 RGKFSDEEEQIIINLHAVLGNK-WSAIATHLP-GRTDNEIKNFWNTHL 114 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MMGRSPSSSD ENGLKKGPWT PEEDRKLIDY IERNGHGSWR ALPKLAGLNR CGKSCRLRWT 60 NYLRPDIKRG KFSDEEEQII INLHAVLGNK WSAIATHLPG RTDNEIKNFW NTHLKKKLLQ 120 MGIDPVTHRP RTDLCLLANL PQLLSAAASH FVNPMNNNSW DNNSLSLRLH TDATQQLAKL 180 QLLHNIVQVL STSPVTPTME ALNHLGTLPL HDHHDHLHEY LRMNSQFELE GLGNSTINLA 240 SNPNQIPYSS TFPSLIDVNQ PTHNVHQPIG NSKIFNGDDS DANDQFGAIP KENSLPPLVS 300 VLDSTDQCFT VNGMENKMNP SDHISNPSTS TSTTFGEAWG ELLDDDDAA

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MMGRSPSSSD ENGLKKGPWT PEEDRKLIDY IERNGHGSWR ALPKLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSDEEEQII INLHAVLGNK WSAIATHLPG RTDNEIKNFW NTHLKKKLLQ  120
MGIDPVTHRP RTDLCLLANL PQLLSAAASH FVNPMNNNSW DNNSLSLRLH TDATQQLAKL  180
QLLHNIVQVL STSPVTPTME ALNHLGTLPL HDHHDHLHEY LRMNSQFELE GLGNSTINLA  240
SNPNQIPYSS TFPSLIDVNQ PTHNVHQPIG NSKIFNGDDS DANDQFGAIP KENSLPPLVS  300
VLDSTDQCFT VNGMENKMNP SDHISNPSTS TSTTFGEAWG ELLDDDDAA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	2e-88	MYB family protein