PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028110901.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 334aa MW: 36171.9 Da PI: 8.4844 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.4 | 3.8e-19 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ l ++v+++G ++W++I++ ++ gR++k+c++rw + XP_028110901.1 12 KGPWSPEEDDMLQKLVQKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 57 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 53.8 | 4.5e-17 | 66 | 108 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde + +a++++G++ W+tIar + gRt++ +k++w++ XP_028110901.1 66 AFTPEEDETIMRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 108 79******************.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 334 aa Download sequence |
MASTKKDVDR IKGPWSPEED DMLQKLVQKH GARNWSLISK SIPGRSGKSC RLRWCNQLSP 60 QVEHRAFTPE EDETIMRAHA RFGNKWATIA RLLSGRTDNA IKNHWNSTLK RKCSSMSTDE 120 GDDCSNHQPL KRSVSAGSAV PVSGLYLNPS SPSGSDVSDS SLPVMSSSHV YRPVARTGGV 180 LPPQVETTSL KNDPTTSLSL SLPGVDSSDS SNRVNEATQL RPPPPAAALV SMNIEFASPS 240 MAAAPAIVVP VQPVNQRNSE FGGVSSPAPE TAFPQFSAEL LGVMQEMIRK EVWNYMAGIE 300 QIPTQQQGGY CMPQATADGF MNAVVKRIGI SKIE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 4e-85 | MYB family protein |