PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028110066.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 402aa MW: 46302.3 Da PI: 4.2792

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028110066.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49	1.6e-15	170	254	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W+ev++k+ +e ++er +qC+++++ l+k+ykk+k + +++s+++yf++++ XP_028110066.1 170 WTEHETFVLLDAWGDRFLKRGRKSLRSDEWQEVAEKVtQESKIERADTQCRNRLDTLKKKYKKEKIKLAES-RDTTSKWVYFRKMD 254 ***********************************88999*********************9996.67777******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 402 aa Download sequence
MGDTDDDARY PPIPYGVTQG YGSAQRLKLP IRSSSYPRQV GNQYVNVDDD DDDNEEVDEA 60 EEVDEEEEEE EEEENDDNED NANRQMVKVE NVDDDDNDDD GDDETEDEDG DEQNGYSVRI 120 GDVDLERHQK KRKVKSLSSY EFAPRVAASP MATASTSKPS FGGRNPLADW TEHETFVLLD 180 AWGDRFLKRG RKSLRSDEWQ EVAEKVTQES KIERADTQCR NRLDTLKKKY KKEKIKLAES 240 RDTTSKWVYF RKMDMLMSPA PKQPGLSCGV DSGEFVFMNP KVYLNRANGL DEMRDSPGNS 300 GSAEEEDSDE LPPKRTRMGK ERDDGASFRL LADSIHKFSE IYEKIENSKR QQMLELEKMR 360 MDFHRELESQ RRQILERTQA EIEKIRQGDN EENDLSAENI SG

Sequence ? help Back to Top

Protein Sequence Length: 402 aa Download sequence

MGDTDDDARY PPIPYGVTQG YGSAQRLKLP IRSSSYPRQV GNQYVNVDDD DDDNEEVDEA  60
EEVDEEEEEE EEEENDDNED NANRQMVKVE NVDDDDNDDD GDDETEDEDG DEQNGYSVRI  120
GDVDLERHQK KRKVKSLSSY EFAPRVAASP MATASTSKPS FGGRNPLADW TEHETFVLLD  180
AWGDRFLKRG RKSLRSDEWQ EVAEKVTQES KIERADTQCR NRLDTLKKKY KKEKIKLAES  240
RDTTSKWVYF RKMDMLMSPA PKQPGLSCGV DSGEFVFMNP KVYLNRANGL DEMRDSPGNS  300
GSAEEEDSDE LPPKRTRMGK ERDDGASFRL LADSIHKFSE IYEKIENSKR QQMLELEKMR  360
MDFHRELESQ RRQILERTQA EIEKIRQGDN EENDLSAENI SG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	188	232	KRGRKSLRSDEWQEVAEKVTQESKIERADTQCRNRLDTLKKKYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-73	Trihelix family protein