PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109134.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 289aa    MW: 32077.1 Da    PI: 7.3416
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109134.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.9e-18140194256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Lee F+ +++++ ++++eLA++l+L  rqV vWFqNrRa+ k
  XP_028109134.1 140 RKKLRLNKDQSALLEESFKLHSTLNPKQKQELARRLNLRPRQVEVWFQNRRARTK 194
                     677889***********************************************98 PP
2HD-ZIP_I/II121.25.4e-39140228190
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                     +kk+rl+k+q++lLEesF+ +++L+p++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l++en+rL+ke +eL+ +
  XP_028109134.1 140 RKKLRLNKDQSALLEESFKLHSTLNPKQKQELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCENLTDENRRLQKELQELK-A 228
                     69*************************************************************************************9.4 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGFDDDLCNN PGLVLGLGFT SSSSAAAVET PSMADNQRPN KLDHHHRLAK KEAISLFEPS  60
LSLGLCGGET YNQIQEANKG CNNESAELLL YRQDSGTSSF SNGSVVKRER EVGSEEVEIE  120
RVSSRVISDE DDDGGSANGR KKLRLNKDQS ALLEESFKLH STLNPKQKQE LARRLNLRPR  180
QVEVWFQNRR ARTKLKQTEV DCELLKKCCE NLTDENRRLQ KELQELKALK LPQPFYMQLP  240
AATLSMCPSC ERIGSASAAA DTTSKISSPF AMAPKPHFFN PFTNPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189197RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-72HD-ZIP family protein