PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109092.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MYB
Protein Properties Length: 321aa    MW: 36064.4 Da    PI: 6.4256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109092.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +v+++G+g+W++++   g++R+ k+c++rw +yl
   XP_028109092.1 14 KGPWTPEEDIMLVSYVQEHGPGNWRAVPTNTGLRRCSKSCRLRWANYL 61
                     79********************************************97 PP
2Myb_DNA-binding49.21.2e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E+++++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_028109092.1  67 RGSFTDHEEKIIIQLQALLGNK-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRSPCCDKV GVKKGPWTPE EDIMLVSYVQ EHGPGNWRAV PTNTGLRRCS KSCRLRWANY  60
LRPGIKRGSF TDHEEKIIIQ LQALLGNKWA AIASYLPERT DNDIKNYWNT HLKKKLKKLQ  120
EQEAFDDHHS QVGFSTSHSI SRGQWEKKLQ TDINKAKQAL HEALSLEKPS LIVPELKPSN  180
GYYSYTKPTT QGPTYASSTE NIARLLKGWM KNSPKQAHAN SSSTQNSMSC EETLSVPNNS  240
GIDLSEAFES LFGFESLDSS NSDFSQSMSP EASLLQGESK PDLGMHVPLS MLENWLFDEG  300
VVQGIKEDLT DFSFDENAEL F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-98MYB family protein