PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109075.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 367aa MW: 39848.3 Da PI: 5.0178

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109075.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25.8	2.1e-08	19	64	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +r+C+++++ +C++++ +lC +C +H H++v++ XP_028109075.1 19 QRVCDTCHSAASAVYCRTDSAYLCTTCDARIHAAnsvaarHKRVSV 64 579****99*******************66789999999875 PP
2	zf-B_box	29.2	1.9e-09	62	107	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ + C+ + lC++C + +H H +vp+ XP_028109075.1 62 VSVCEACERAPAAFLCKADAASLCPSCDDDIHAAnplasrHHRVPI 107 579*****************************66889999777775 PP
3	CCT	68.6	1.7e-23	298	341	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_028109075.1 298 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRT 341 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MLKDEGTGNV VGIGTNNWQR VCDTCHSAAS AVYCRTDSAY LCTTCDARIH AANSVAARHK 60 RVSVCEACER APAAFLCKAD AASLCPSCDD DIHAANPLAS RHHRVPIMPI PACLFGPPAT 120 DPGGSEADGF FGNEPEDEAI GEEDEDESGS WLLHNVPVKN NTNQNTSNGF LYGGEVIDEY 180 LDLVDYNTCE ESQFTDQYSG VIGDQKNYGG GGGDRVVPVQ HQQQQNYQLG METGFGCPVS 240 ISHTVSISSM DVGVVPDSTM SDDVSVSVSA SHSRPPKGTI DLFSSPLHMP SQLSPMDREA 300 RVLRYREKKK ARKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEVDVDQM FSATLMADGG 360 YGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MLKDEGTGNV VGIGTNNWQR VCDTCHSAAS AVYCRTDSAY LCTTCDARIH AANSVAARHK  60
RVSVCEACER APAAFLCKAD AASLCPSCDD DIHAANPLAS RHHRVPIMPI PACLFGPPAT  120
DPGGSEADGF FGNEPEDEAI GEEDEDESGS WLLHNVPVKN NTNQNTSNGF LYGGEVIDEY  180
LDLVDYNTCE ESQFTDQYSG VIGDQKNYGG GGGDRVVPVQ HQQQQNYQLG METGFGCPVS  240
ISHTVSISSM DVGVVPDSTM SDDVSVSVSA SHSRPPKGTI DLFSSPLHMP SQLSPMDREA  300
RVLRYREKKK ARKFEKTIRY ASRKAYAETR PRIKGRFAKR TDVEVDVDQM FSATLMADGG  360
YGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	1e-104	CO-like family protein