PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028108731.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 581aa MW: 65118.7 Da PI: 6.2654

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028108731.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.0011	102	120	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cgk F++ L H+r XP_028108731.1 102 CKECGKEFPSLRALSGHMR 120 ******************8 PP
2	zf-C2H2	12.8	0.00037	131	151	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk F + L H+r H XP_028108731.1 131 CKQCGKGFDSMRALFGHMRHH 151 *******************99 PP
3	zf-C2H2	11.6	0.00088	492	514	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k+F++ L H r H XP_028108731.1 492 HKCPICFKVFTSGQALGGHKRAH 514 79***********9999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MEEDQEHRFV CKICSKSCFS GKSLGGHMRG HLASISAKKH EDHQNGEKVL RVSDSTQKLE 60 KLKNGDLGLE GDCHGSYGLR ENPKKTWRVS NPKQSVHEEK LCKECGKEFP SLRALSGHMR 120 CHSIKDKENI CKQCGKGFDS MRALFGHMRH HTKRSRLSNE SPKESQSEYE TACPIRRKRS 180 KTRYKITGNF ASSNLNSSSN VSEIDEVEEA AMCLIMLSRG VINWAEFNSV LESSENNSVI 240 FEAKSVHQSE KLVSDVDETW KVKKLGVKFD SCVSYSGNSV FEKNESELGE FDSGFFSKNK 300 KKAEFEVSID GFHEGDKFKK PVVDDESEIK NGSEPTEVEL EKGLMREVVL GQADSEILKS 360 NSSKEAGFDV QEPELGAGFE VQDPELGENL CDEINFVAST SGIFEDFQKK REYTCKTCNK 420 IFHSYRALGG HRANHKTISS SENRTVEANI SPLTNTEANS KLDKLECNEN AVEHDIGLGA 480 MTSYELKKSK DHKCPICFKV FTSGQALGGH KRAHYIGFSE NRNTESVSTK QEELPDIHNS 540 IFDLNVPLSL ESEVNDDDVV VGFKPWLVGS DHEREPLLIS N

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MEEDQEHRFV CKICSKSCFS GKSLGGHMRG HLASISAKKH EDHQNGEKVL RVSDSTQKLE  60
KLKNGDLGLE GDCHGSYGLR ENPKKTWRVS NPKQSVHEEK LCKECGKEFP SLRALSGHMR  120
CHSIKDKENI CKQCGKGFDS MRALFGHMRH HTKRSRLSNE SPKESQSEYE TACPIRRKRS  180
KTRYKITGNF ASSNLNSSSN VSEIDEVEEA AMCLIMLSRG VINWAEFNSV LESSENNSVI  240
FEAKSVHQSE KLVSDVDETW KVKKLGVKFD SCVSYSGNSV FEKNESELGE FDSGFFSKNK  300
KKAEFEVSID GFHEGDKFKK PVVDDESEIK NGSEPTEVEL EKGLMREVVL GQADSEILKS  360
NSSKEAGFDV QEPELGAGFE VQDPELGENL CDEINFVAST SGIFEDFQKK REYTCKTCNK  420
IFHSYRALGG HRANHKTISS SENRTVEANI SPLTNTEANS KLDKLECNEN AVEHDIGLGA  480
MTSYELKKSK DHKCPICFKV FTSGQALGGH KRAHYIGFSE NRNTESVSTK QEELPDIHNS  540
IFDLNVPLSL ESEVNDDDVV VGFKPWLVGS DHEREPLLIS N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26610.1	9e-25	C2H2 family protein