PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028108727.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 430aa MW: 48298.5 Da PI: 6.941

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028108727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.7	2.4e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv+ ++++G g+W+++++ g+ R++k+c++rw +yl XP_028108727.1 14 KGLWSPEEDEKLVRHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	43.9	5.5e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++ XP_028108727.1 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110 899*****************.*****.*******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLVRHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SLKKKLRQRG 120 IDPNTHKPLS EIENEEKVSA TIKNNERASG GSSSHDQLTE KPKVSVAADS YSLIENSPPP 180 PPPPLPPPPT HEFFQERFVS SHESSTATGC KPPDFPGYFS FQQLNYRPDM GLSANPNTTL 240 FLNPNSRCSE MISEFNSTVF TSMSSPILTT TTQIKPSISL PSSLGTFDIN GIHNWNSGTY 300 SNNGSSSNGS SNSIESSFFD NNNNNFSWVP TADCVKSEKE TEIQPIDGDP EEIKWSEYLQ 360 TPFLLATTIQ NQAAQDIYNE TKSESQFVMT HAPSSTNWHQ NQQQQQEASQ ATDLYNKHFQ 420 RLAASYGQFS

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLVRHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SLKKKLRQRG  120
IDPNTHKPLS EIENEEKVSA TIKNNERASG GSSSHDQLTE KPKVSVAADS YSLIENSPPP  180
PPPPLPPPPT HEFFQERFVS SHESSTATGC KPPDFPGYFS FQQLNYRPDM GLSANPNTTL  240
FLNPNSRCSE MISEFNSTVF TSMSSPILTT TTQIKPSISL PSSLGTFDIN GIHNWNSGTY  300
SNNGSSSNGS SNSIESSFFD NNNNNFSWVP TADCVKSEKE TEIQPIDGDP EEIKWSEYLQ  360
TPFLLATTIQ NQAAQDIYNE TKSESQFVMT HAPSSTNWHQ NQQQQQEASQ ATDLYNKHFQ  420
RLAASYGQFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKKLRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-101	MYB family protein