PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107780.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 1759aa MW: 192829 Da PI: 5.423

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.2	9.1e-09	807	848	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WTteE e ++d + G++ ++tIa+ + ++t +c+++++k XP_028107780.1 807 PWTTEEKETFLDKLATSGKD-FRTIASFLD-HKTTADCVEFYYK 848 8***************99.*****.*********98 PP
2	Myb_DNA-binding	29.8	1.4e-09	1026	1066	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++ +av +G++ + +I+r++ +R++ qck ++ XP_028107780.1 1026 DWTDEEKSIFMQAVSSYGKD-FMKISRCVR-TRSRDQCKVFFS 1066 5***************99.*****.******8776 PP

Sequence ? help Back to Top
Protein Sequence Length: 1759 aa Download sequence
MPPEPLPWDR KDFFKERKHE RFSDSVGSVS RWRDTTPHSS RDFARWGPPD VRTRPPGQGK 60 QGGWHIYSEE SGHGFTPSRS NEKILDDESC RPYGGSRADG KYIRNSSREY RGGSTSQKDW 120 KGHSWENGSS PNGHGPARPV DVNDQRSVHD NKLTHNTHLH SDFVNTWDQL HSKEQHDKTG 180 SVNGLGTGQK LERENSLRSI DWKPLKWTRS GSLSSRGSGF SHSGSSKSMG VDSIEVKGEV 240 QIRNVTPLQS PSGDAAACET SAALSEDASS RKKPRLKWGE GLAKYEKKKV DPDDCATKHG 300 MDVFGSLEPV QSHASNLADK SPRAARFSDC ASPATPSSVA CSSSPGVEDK PFVKAANIDN 360 DTCNLSGSPS LHSQNHLEEG RDFNLETLEL TPIANLSTSL SELLQSDDPG SVDSSFLRST 420 AISKLLVWKG DVLKALEMTE SEIDSLENEL KLLISESGNS SCPVASRSLH GECQEKPCEE 480 LVVVSNLIPR PSPLQLVSSG DMIVEKAVGS LEKEHADVRD EDVDSPGTVT SRFVELHSSA 540 KGAALTDLVK HAKRSGDLDA SESRNMEAKC SVHDSSEEMT EGLSTSEGGD ELIANKSCVA 600 SVDVNFHCDR EDTLYDLILA SNKESANRAS EVFNKLLPSD ECHIDISKTC RSSIWPNDPL 660 IKEKFAMRKR FSRFKERVIT LKFRAFQHIW KEDMRLISIR KNHAKSQKRS ELSLRTPHGS 720 YQKHRSSIRS RFSSPAGIST PTLAPTKESI NFTRKLLSDS QFKIYRNSLK MPALILDKES 780 ICSRFISSNG LIEDPCAIEK ERAMINPWTT EEKETFLDKL ATSGKDFRTI ASFLDHKTTA 840 DCVEFYYKNH KSDCFAKTKK KPEFAKLGKS CSTSNYLVTS GKRWNRMANA ASLDMLGVAS 900 AIAANADNGM QNQQKATARF LMGVTGDYRA SQGDEGIMER SGGLEIFGNE RETVAADVLA 960 GIGASLSSEA MSSCITSSFD PGESCQNWKC QKVGSLSKRP LTPEVTQNVD DESCSDESCG 1020 EMDPTDWTDE EKSIFMQAVS SYGKDFMKIS RCVRTRSRDQ CKVFFSKARK CLGLDMIHHV 1080 PGDEGMPISD DATGGGSDNE DACVTGSVVC SEKSVSKMDE DLILSDLNIN HCEPDPAETM 1140 DLQNDPNRSE ENNETGQFDC KDPELQVEHL VTDDLLADSK PEVDFDGDSK MEDDVDGMPV 1200 IVQTHENAIL PPDTEVEGDE AAGDGACLGE PVSAKEANDH GLPVSGAEGE TIAVSQSSTV 1260 CFTTEVEVQQ MVSENKQDEN KDANASGPSN INCSNEVLHT DGTSSDHVPD ANAPLEIGVG 1320 PKEEQKIALE LSAPQVPSVI SLEQDVSLVN ANSTEGPAAS QYEKTLKQDT PLTLALETIR 1380 DQQCQKSTSA DDYNQHQSIN SVLGCAESGQ ILRGYPLAVS AKKEMNGDIT SRKLASLQCL 1440 SKAEGNFHSD LYFLQKCKSS KARSSVAELP FLSQDQKSNH SRPHSLSSSD TEKPCRNGDV 1500 KLFGQILTHP SSQQKQNTTS DIQENEDKGV QHPKFSSKNS NLKFTGTHSL DANSTSSKFD 1560 RNNYLDLENV PVRSYGFWDG NRIQTGFSTF PDSAILLAKY PAAFGRYSTL SNAEQQPLHS 1620 VVKSSNECNL NGVSVFSSRD MSSSNGVAEY QLYRNREGTT RVQPFAVDMK QQRPDMLFSE 1680 MQRRNGIEAV SSIQQQARGM VGINVVGRGG ILVGGARNGI SDPVAAIKMH YAKTEQYNGQ 1740 TASIIREEES WRGKGDIGR

Sequence ? help Back to Top

Protein Sequence Length: 1759 aa Download sequence

MPPEPLPWDR KDFFKERKHE RFSDSVGSVS RWRDTTPHSS RDFARWGPPD VRTRPPGQGK  60
QGGWHIYSEE SGHGFTPSRS NEKILDDESC RPYGGSRADG KYIRNSSREY RGGSTSQKDW  120
KGHSWENGSS PNGHGPARPV DVNDQRSVHD NKLTHNTHLH SDFVNTWDQL HSKEQHDKTG  180
SVNGLGTGQK LERENSLRSI DWKPLKWTRS GSLSSRGSGF SHSGSSKSMG VDSIEVKGEV  240
QIRNVTPLQS PSGDAAACET SAALSEDASS RKKPRLKWGE GLAKYEKKKV DPDDCATKHG  300
MDVFGSLEPV QSHASNLADK SPRAARFSDC ASPATPSSVA CSSSPGVEDK PFVKAANIDN  360
DTCNLSGSPS LHSQNHLEEG RDFNLETLEL TPIANLSTSL SELLQSDDPG SVDSSFLRST  420
AISKLLVWKG DVLKALEMTE SEIDSLENEL KLLISESGNS SCPVASRSLH GECQEKPCEE  480
LVVVSNLIPR PSPLQLVSSG DMIVEKAVGS LEKEHADVRD EDVDSPGTVT SRFVELHSSA  540
KGAALTDLVK HAKRSGDLDA SESRNMEAKC SVHDSSEEMT EGLSTSEGGD ELIANKSCVA  600
SVDVNFHCDR EDTLYDLILA SNKESANRAS EVFNKLLPSD ECHIDISKTC RSSIWPNDPL  660
IKEKFAMRKR FSRFKERVIT LKFRAFQHIW KEDMRLISIR KNHAKSQKRS ELSLRTPHGS  720
YQKHRSSIRS RFSSPAGIST PTLAPTKESI NFTRKLLSDS QFKIYRNSLK MPALILDKES  780
ICSRFISSNG LIEDPCAIEK ERAMINPWTT EEKETFLDKL ATSGKDFRTI ASFLDHKTTA  840
DCVEFYYKNH KSDCFAKTKK KPEFAKLGKS CSTSNYLVTS GKRWNRMANA ASLDMLGVAS  900
AIAANADNGM QNQQKATARF LMGVTGDYRA SQGDEGIMER SGGLEIFGNE RETVAADVLA  960
GIGASLSSEA MSSCITSSFD PGESCQNWKC QKVGSLSKRP LTPEVTQNVD DESCSDESCG  1020
EMDPTDWTDE EKSIFMQAVS SYGKDFMKIS RCVRTRSRDQ CKVFFSKARK CLGLDMIHHV  1080
PGDEGMPISD DATGGGSDNE DACVTGSVVC SEKSVSKMDE DLILSDLNIN HCEPDPAETM  1140
DLQNDPNRSE ENNETGQFDC KDPELQVEHL VTDDLLADSK PEVDFDGDSK MEDDVDGMPV  1200
IVQTHENAIL PPDTEVEGDE AAGDGACLGE PVSAKEANDH GLPVSGAEGE TIAVSQSSTV  1260
CFTTEVEVQQ MVSENKQDEN KDANASGPSN INCSNEVLHT DGTSSDHVPD ANAPLEIGVG  1320
PKEEQKIALE LSAPQVPSVI SLEQDVSLVN ANSTEGPAAS QYEKTLKQDT PLTLALETIR  1380
DQQCQKSTSA DDYNQHQSIN SVLGCAESGQ ILRGYPLAVS AKKEMNGDIT SRKLASLQCL  1440
SKAEGNFHSD LYFLQKCKSS KARSSVAELP FLSQDQKSNH SRPHSLSSSD TEKPCRNGDV  1500
KLFGQILTHP SSQQKQNTTS DIQENEDKGV QHPKFSSKNS NLKFTGTHSL DANSTSSKFD  1560
RNNYLDLENV PVRSYGFWDG NRIQTGFSTF PDSAILLAKY PAAFGRYSTL SNAEQQPLHS  1620
VVKSSNECNL NGVSVFSSRD MSSSNGVAEY QLYRNREGTT RVQPFAVDMK QQRPDMLFSE  1680
MQRRNGIEAV SSIQQQARGM VGINVVGRGG ILVGGARNGI SDPVAAIKMH YAKTEQYNGQ  1740
TASIIREEES WRGKGDIGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	271	289	RKKPRLKWGEGLAKYEKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	1e-166	MYB family protein