PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028106784.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 394aa MW: 43518.4 Da PI: 10.3665

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028106784.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.3	1.3e-15	63	150	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++ + ++ ++ +qCk++++ ++k+yk +k ++ + s++p+f++l+ XP_028106784.1 63 CWSEGATSVLIEAWGERYMELSRGNLKQKHWKEVADIVssreDYGKTPKTDIQCKNRIDTVKKKYKVEKSKIAGG--GGPSKWPFFERLD 150 7***********************************85444455566778*************999997..67778****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence
MEDDEEIQSQ PSPDTGSPAS PGTNGRITVT VAAAPPQNTL TLALPIQQPR SAGSGGGGGR 60 EDCWSEGATS VLIEAWGERY MELSRGNLKQ KHWKEVADIV SSREDYGKTP KTDIQCKNRI 120 DTVKKKYKVE KSKIAGGGGP SKWPFFERLD QLIGPTAKIA SGTSTTPNHL LTPGAPHKVP 180 VGIPVGVRSV HEFKQHQQNQ QQQKLKQKQQ NQKQKQKQAF RKQAPVDSDS SRSEPDPPSP 240 DSTDSFPPEP YRPKRPRVQR DMNSNANANA NAMVVRPVMM NQGTRDGVGG GGGRGGGRDK 300 NWGNSVRELT RAILKFGEAY EQAESSKLQQ VVEMEKQRMK FAKELELQRM QFFMKTQLEL 360 SQLKNRRVGS SNHHSNNNNN NNNNNNNNNS DSSS

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence

MEDDEEIQSQ PSPDTGSPAS PGTNGRITVT VAAAPPQNTL TLALPIQQPR SAGSGGGGGR  60
EDCWSEGATS VLIEAWGERY MELSRGNLKQ KHWKEVADIV SSREDYGKTP KTDIQCKNRI  120
DTVKKKYKVE KSKIAGGGGP SKWPFFERLD QLIGPTAKIA SGTSTTPNHL LTPGAPHKVP  180
VGIPVGVRSV HEFKQHQQNQ QQQKLKQKQQ NQKQKQKQAF RKQAPVDSDS SRSEPDPPSP  240
DSTDSFPPEP YRPKRPRVQR DMNSNANANA NAMVVRPVMM NQGTRDGVGG GGGRGGGRDK  300
NWGNSVRELT RAILKFGEAY EQAESSKLQQ VVEMEKQRMK FAKELELQRM QFFMKTQLEL  360
SQLKNRRVGS SNHHSNNNNN NNNNNNNNNS DSSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	3e-62	Trihelix family protein