PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028106736.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 473aa MW: 52472.9 Da PI: 7.7574

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028106736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	155	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028106736.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204 78*****************......55**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence
MLDLNVDSSC NEVEATKITK LPRSDDCSGT SISSIVNNNT PDEDSTSNPP SSSVCSFNFD 60 IFSSKAKDPS IIIAIQDDSD ENSPPQFVTR QFFPSGHSDE FDSRSSSLRP PQCVNLSFSD 120 SGGVPELTNF QQQQHKQPQQ QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHA AARAYDRAAI KFRGLDADIN FSLSNYEEDM KQMTNLTKEE FVQILRRRST 240 GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAITNFE ASTYEGEISF 300 DTNIPDGSTA QNLDLNLWIS APTDVPKGND NVRNFQSQYA ACEMPDGKRP KVETSVSSPI 360 DGRNIQGLTM ASKNSSVWSG NHPSFTPNYE ERALGKVTEA IPSPAFPNWA WKMQNQSVDS 420 PVALFSAAAS SGFPPSTPTT TLSATLAPQN LQNITPYFPT QTTNISHFYN HKS

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence

MLDLNVDSSC NEVEATKITK LPRSDDCSGT SISSIVNNNT PDEDSTSNPP SSSVCSFNFD  60
IFSSKAKDPS IIIAIQDDSD ENSPPQFVTR QFFPSGHSDE FDSRSSSLRP PQCVNLSFSD  120
SGGVPELTNF QQQQHKQPQQ QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGLDADIN FSLSNYEEDM KQMTNLTKEE FVQILRRRST  240
GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAITNFE ASTYEGEISF  300
DTNIPDGSTA QNLDLNLWIS APTDVPKGND NVRNFQSQYA ACEMPDGKRP KVETSVSSPI  360
DGRNIQGLTM ASKNSSVWSG NHPSFTPNYE ERALGKVTEA IPSPAFPNWA WKMQNQSVDS  420
PVALFSAAAS SGFPPSTPTT TLSATLAPQN LQNITPYFPT QTTNISHFYN HKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	3e-78	AP2 family protein