PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028106735.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 488aa MW: 54199.9 Da PI: 7.4688

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028106735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.2	3.5e-17	155	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028106735.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204 78*****************......55**********************998 PP
2	AP2	39.4	1.5e-12	247	297	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f ++ eAa+a+++a+ k +g XP_028106735.1 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFNSEVEAARAYDKAAIKCNG 297 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MLDLNVDSSC NEVEATKITK LPRSDDCSGT SISSIVNNNT PDEDSTSNPP SSSVCSFNFD 60 IFSSKAKDPS IIIAIQDDSD ENSPPQFVTR QFFPSGHSDE FDSRSSSLRP PQCVNLSFSD 120 SGGVPELTNF QQQQHKQPQQ QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHA AARAYDRAAI KFRGLDADIN FSLSNYEEDM KQMTNLTKEE FVQILRRRST 240 GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFNS EVEAARAYDK AAIKCNGREA 300 ITNFEASTYE GEISFDTNIP DGSTAQNLDL NLWISAPTDV PKGNDNVRNF QSQYAACEMP 360 DGKRPKVETS VSSPIDGRNI QGLTMASKNS SVWSGNHPSF TPNYEERALG KVTEAIPSPA 420 FPNWAWKMQN QSVDSPVALF SAAASSGFPP STPTTTLSAT LAPQNLQNIT PYFPTQTTNI 480 SHFYNHKS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MLDLNVDSSC NEVEATKITK LPRSDDCSGT SISSIVNNNT PDEDSTSNPP SSSVCSFNFD  60
IFSSKAKDPS IIIAIQDDSD ENSPPQFVTR QFFPSGHSDE FDSRSSSLRP PQCVNLSFSD  120
SGGVPELTNF QQQQHKQPQQ QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGLDADIN FSLSNYEEDM KQMTNLTKEE FVQILRRRST  240
GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KYIYLGLFNS EVEAARAYDK AAIKCNGREA  300
ITNFEASTYE GEISFDTNIP DGSTAQNLDL NLWISAPTDV PKGNDNVRNF QSQYAACEMP  360
DGKRPKVETS VSSPIDGRNI QGLTMASKNS SVWSGNHPSF TPNYEERALG KVTEAIPSPA  420
FPNWAWKMQN QSVDSPVALF SAAASSGFPP STPTTTLSAT LAPQNLQNIT PYFPTQTTNI  480
SHFYNHKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	6e-89	AP2 family protein