PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028104894.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 270aa    MW: 30379.2 Da    PI: 8.0538
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028104894.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.65.2e-19124178256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Le+ F+++ +++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  XP_028104894.1 124 RKKLRLTKEQSVILEDSFKEHTTLNPNQKQALAKQLNLRPRQVEVWFQNRRARTK 178
                     788899***********************************************98 PP
2HD-ZIP_I/II119.81.5e-38124212189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq+ +LE+sF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lk+ + +lk+en+rL+ke +eL++
  XP_028104894.1 124 RKKLRLTKEQSVILEDSFKEHTTLNPNQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEIDCESLKNYCAKLKDENRRLQKELQELKA 212
                     69*************************************************************************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MVSEDICNTG LTLGSAPITT PENHLHSHHH HHHQHNKKLL SLKFDHVLPC LTLGLSSEEQ  60
KIKTSVKIDA CKVHGESTIS LSAVSSYSNS SVKRERDEEV EVEKVSSKVS DDQDQDQEEE  120
GSARKKLRLT KEQSVILEDS FKEHTTLNPN QKQALAKQLN LRPRQVEVWF QNRRARTKLK  180
QTEIDCESLK NYCAKLKDEN RRLQKELQEL KAPNVAAPFY MQLPAATLTM CPSCERIGST  240
GGSENSSKSP FSIGAKHHFY SPFTHPSAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173181RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-73HD-ZIP family protein