PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028103108.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 429aa MW: 48783.9 Da PI: 6.7012

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028103108.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	44.6	3.5e-14	71	130	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n k+ ++++lg ++ +e Aa ++ a++k++g XP_028103108.1 71 SIYRGVTRHRWTGRFEAHLWDkSSWNSiqnKKgRQIYLGAYDNEEAAAHTYDLAALKYWG 130 57*****************777788866447***********************98 PP
2	AP2	52.3	1.5e-16	173	224	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_028103108.1 173 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAAAYDMAAIEYRG 224 89**99******99966...3.6***********************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MKRSPSSCWS SSSTSSVESD LHPAHHHDDQ SAQRKPKAKR PRSRPRGAIN KNLNQNKSQK 60 IINPNSPRRS SIYRGVTRHR WTGRFEAHLW DKSSWNSIQN KKGRQIYLGA YDNEEAAAHT 120 YDLAALKYWG ADTALNFPID TYTKELGEMQ KQSKEEYLAS LRRQSSGFSR GVSKYRGVAR 180 HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AAAAYDMAAI EYRGPNAVTN FDISIYAGRL 240 KKNKALLDEQ PQQPNPKSSI EEWGDQQQLQ HQHHHRLHRE DEQEKILVVP QPQPLNLEFP 300 PAIDSADHMV VTDSTNEHDH PWSLCLDTGF NMLPVPDIPL EKVGELPDLF NDTGFEDNIE 360 FIFDGPSNEN FEFNLDSLFI DTTTNLVDND ILWVMEEKER AGLTSPPPPS PSSSSPSSST 420 TNTTLFPCN

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MKRSPSSCWS SSSTSSVESD LHPAHHHDDQ SAQRKPKAKR PRSRPRGAIN KNLNQNKSQK  60
IINPNSPRRS SIYRGVTRHR WTGRFEAHLW DKSSWNSIQN KKGRQIYLGA YDNEEAAAHT  120
YDLAALKYWG ADTALNFPID TYTKELGEMQ KQSKEEYLAS LRRQSSGFSR GVSKYRGVAR  180
HHHNGRWEAR IGRVFGNKYL YLGTYSTQEE AAAAYDMAAI EYRGPNAVTN FDISIYAGRL  240
KKNKALLDEQ PQQPNPKSSI EEWGDQQQLQ HQHHHRLHRE DEQEKILVVP QPQPLNLEFP  300
PAIDSADHMV VTDSTNEHDH PWSLCLDTGF NMLPVPDIPL EKVGELPDLF NDTGFEDNIE  360
FIFDGPSNEN FEFNLDSLFI DTTTNLVDND ILWVMEEKER AGLTSPPPPS PSSSSPSSST  420
TNTTLFPCN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	33	40	QRKPKAKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	1e-116	AP2 family protein