PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028102729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 186aa MW: 20822.7 Da PI: 8.7704 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 198.1 | 3.7e-61 | 7 | 158 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+ ++ + + + + +++ +++ +++++v+ XP_028102729.1 7 VVPEQLCYIPCNFCNIVLAVSVPCNSLFDMVTVRCGHCSNLWSVNMAAAFQSLSWQDTQ---------ASNTSPDYKIDFGSTSKCNNKATVRPP 92 679************************************************99999962.........222222233333333333333333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + v r v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_028102729.1 93 PIA---NTAVER--AVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 158 332...333444..589****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 186 aa Download sequence |
MSSCVDVVPE QLCYIPCNFC NIVLAVSVPC NSLFDMVTVR CGHCSNLWSV NMAAAFQSLS 60 WQDTQASNTS PDYKIDFGST SKCNNKATVR PPPIANTAVE RAVNRPPEKR QRVPSAYNQF 120 IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML ESNNNQTKLD QGSGKHLMPR 180 TSVLRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.1 | 8e-82 | YABBY family protein |