PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028102585.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 633aa MW: 70262.8 Da PI: 5.6373

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028102585.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.1	6.7e-30	59	143	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r+++lk+plWeevs+k++e g++r++k+Ckek+en+ k++k++keg++ +++ +t+++fdqlea XP_028102585.1 59 RWPRQETLALLKIRSEMDVAFRDSSLKGPLWEEVSRKLAELGYHRNAKKCKEKFENVYKYHKRTKEGRST--KPDGKTYRFFDQLEA 143 8*****************************************************************97..577889*****85 PP
2	trihelix	103.2	1.9e-32	452	537	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi +r++++ +++++ k+plWee+s++m + g++r+pk+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a XP_028102585.1 452 RWPKAEVEALISLRTNLDLKYQENGPKGPLWEEISNAMCKIGYNRNPKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 537 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence
MLGVSAMLGN SGHGAAAAAP GANGGGGGEV GVIGPSSVGP SEEEKVRIEE SERNSGGNRW 60 PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKLAELG YHRNAKKCKE KFENVYKYHK 120 RTKEGRSTKP DGKTYRFFDQ LEALESQPPL SLLPPPPRSQ THQAAQSPNP VAVAMPMSMA 180 MPASANLPIV SQVTVPSTAN PISVSLNINP TNPFPSNPFP PPPPPQPVPA TTTTIPNPIN 240 LSQSTPIPSS HPNMSSSFAS ISSSSSTSSD EEPERRGKRK RKWESFFQRL MQEVIEKQEE 300 MQKQFLETLE SRERDRLARE EAWKVQEMAR MNREHDLLVQ ERSIAAAKEA AVIAFLQKVS 360 EQQIPNVPQI QMQMQVHTQE NPIPPPAAAV QQPPPQPQPQ QPAAVQPPPP IVQPTPQPPL 420 QLQPPIQSSA KSLVNPKTDN GGENLASPSS SRWPKAEVEA LISLRTNLDL KYQENGPKGP 480 LWEEISNAMC KIGYNRNPKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDALYK 540 EKAKIDNSTN CFNPGGGFAG IKPENPMVPI MVQPEQQWPL QQEQQHRPEE DRDSENIDQN 600 NDDDDDGDED DDEDEASGYE IVTNKPSSVG MVE

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence

MLGVSAMLGN SGHGAAAAAP GANGGGGGEV GVIGPSSVGP SEEEKVRIEE SERNSGGNRW  60
PRQETLALLK IRSEMDVAFR DSSLKGPLWE EVSRKLAELG YHRNAKKCKE KFENVYKYHK  120
RTKEGRSTKP DGKTYRFFDQ LEALESQPPL SLLPPPPRSQ THQAAQSPNP VAVAMPMSMA  180
MPASANLPIV SQVTVPSTAN PISVSLNINP TNPFPSNPFP PPPPPQPVPA TTTTIPNPIN  240
LSQSTPIPSS HPNMSSSFAS ISSSSSTSSD EEPERRGKRK RKWESFFQRL MQEVIEKQEE  300
MQKQFLETLE SRERDRLARE EAWKVQEMAR MNREHDLLVQ ERSIAAAKEA AVIAFLQKVS  360
EQQIPNVPQI QMQMQVHTQE NPIPPPAAAV QQPPPQPQPQ QPAAVQPPPP IVQPTPQPPL  420
QLQPPIQSSA KSLVNPKTDN GGENLASPSS SRWPKAEVEA LISLRTNLDL KYQENGPKGP  480
LWEEISNAMC KIGYNRNPKR CKEKWENINK YFKKVKESNK KRPEDSKTCP YFHQLDALYK  540
EKAKIDNSTN CFNPGGGFAG IKPENPMVPI MVQPEQQWPL QQEQQHRPEE DRDSENIDQN  600
NDDDDDGDED DDEDEASGYE IVTNKPSSVG MVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	5e-57	Trihelix family protein