PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028102233.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Nin-like

Protein Properties

Length: 685aa MW: 78026.9 Da PI: 6.0761

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028102233.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	45.6	1.4e-14	507	551	4	48
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 ei l+d+ ++ +++i++AA +L+v+ ++LKr CR yG +RWP Rk XP_028102233.1 507 EIPLDDILQNSKKSIQAAADDLKVSRSTLKRVCRGYGFPRWPPRK 551 688999**************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence
MADPDDEGRV AAYFPDDFKQ YVDTQLNRCP VVDDDYWNRF CGWVFWSRED DQSEHPPNIL 60 DLKKKIKDLL RKCLLDLFID PALLQFWAPT MTMEGRSYLT TQNQPFALSA SVTRIDGVKG 120 VCGYRMISMD YKFYMDRESS DEQLGVPGRV FNHGFPEFSP NVEYYSIKEY PLRDHALLCQ 180 IEQSWAIPVF DPSPYLCVGV LEIVSTAPCS IDFVGLNNYL EEVGLESLIS LSRHATDLNV 240 RRWEALDEIN KVLKVVREDH GLHLAQVWAP CVVDCICRAL GKGDIFHVIS NFNDINEYYK 300 FVAVNKVSDL RKWQGVVGRA FSSPNVLFCK DVTQLSIIDY PLAHYARYHK LGCCFAICLQ 360 SSCTGNDIYV LECFMPPSNR DYYGNQQTAL RKILETMKKN FHSFKLASGE ELGGHLYIEE 420 IPFQNGEKLD SVQMSQTTKS LPMLEPLQSG REMIQLDLSN QQSMDALNNE SNVVSAERSN 480 IDVTCSQEKG KTKRPKRVHN KTGVKIEIPL DDILQNSKKS IQAAADDLKV SRSTLKRVCR 540 GYGFPRWPPR KKNMVGQSQP SESSRGVDHQ QISQLSFDLP FNQASTTVVH ANPHNIAIED 600 ANIVTMRAKY INDITIKFRL SLSSSLVELQ QQIAKRLHLE AGSYYVKYKD EEDHVILIAC 660 DDDLQDCIST YRLLGTSFVV LIDPK

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence

MADPDDEGRV AAYFPDDFKQ YVDTQLNRCP VVDDDYWNRF CGWVFWSRED DQSEHPPNIL  60
DLKKKIKDLL RKCLLDLFID PALLQFWAPT MTMEGRSYLT TQNQPFALSA SVTRIDGVKG  120
VCGYRMISMD YKFYMDRESS DEQLGVPGRV FNHGFPEFSP NVEYYSIKEY PLRDHALLCQ  180
IEQSWAIPVF DPSPYLCVGV LEIVSTAPCS IDFVGLNNYL EEVGLESLIS LSRHATDLNV  240
RRWEALDEIN KVLKVVREDH GLHLAQVWAP CVVDCICRAL GKGDIFHVIS NFNDINEYYK  300
FVAVNKVSDL RKWQGVVGRA FSSPNVLFCK DVTQLSIIDY PLAHYARYHK LGCCFAICLQ  360
SSCTGNDIYV LECFMPPSNR DYYGNQQTAL RKILETMKKN FHSFKLASGE ELGGHLYIEE  420
IPFQNGEKLD SVQMSQTTKS LPMLEPLQSG REMIQLDLSN QQSMDALNNE SNVVSAERSN  480
IDVTCSQEKG KTKRPKRVHN KTGVKIEIPL DDILQNSKKS IQAAADDLKV SRSTLKRVCR  540
GYGFPRWPPR KKNMVGQSQP SESSRGVDHQ QISQLSFDLP FNQASTTVVH ANPHNIAIED  600
ANIVTMRAKY INDITIKFRL SLSSSLVELQ QQIAKRLHLE AGSYYVKYKD EEDHVILIAC  660
DDDLQDCIST YRLLGTSFVV LIDPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-78	Nin-like family protein