PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100488.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 649aa MW: 74133.2 Da PI: 7.3135

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100488.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.9	2.3e-08	461	502	2	40
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 ++W eE e+l ++v+++++g +W+ I++++g+gR+ +++ XP_028100488.1 461 KPWGREEIEILRKGVQKYPKGtsrRWEVISEYIGTGRSVEEI 502 68***********************************99876 PP
2	Myb_DNA-binding	24.5	6.2e-08	592	636	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++ + lv+a k ++++ +W+++a+ ++ g+ +qck ++ XP_028100488.1 592 VWSAVQERALVQALKTFPKEtsqRWERVAAAIP-GKNVNQCKKKFA 636 6******************************.******9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MAPKTSVQLI SYSQEIVDGE PIYVSSNCLP IKACKFEPAG HSFHTAALRL SGLFEEEDAD 60 GGEQNVSNDK EQEYVPSSES YSTKGKKKSG AEGKQQDHYA LLGLSHLRYL ATEEQIRKSY 120 RETALKHHPD KQAALLLAEE TETAKQAKKD EIENHFKAIQ EAYEVLIDPA RRRIYDSTDE 180 FDDEIPTDCA PRDFFKVFGP AFMRNGRWSV NQPIPSLGDE STALKEVDSF YNFWYSFKSW 240 REFPNEDEFD LEQAESRDHK RWMERQNAKL TEKARKEDYA RIRALVDNAY KRDPRIQKRK 300 EEEKAEKQKK KEAKYLAKKL QEEEAIRIAE EQRRQKEEEE RLAAEAALHQ KKTREKEKKL 360 LRKERTRFRT LSGPVLSQHL LDVTKDDVES LCLSLEIEQL RNLCEKIEAK EGLEKAKLLK 420 EALGCNHNLE EDQKQDKTPK ENGSVAVNGS VILSSSEKKE KPWGREEIEI LRKGVQKYPK 480 GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDNAKAF DSFLEKRKPA QSIASPLTTR 540 EETEGVSTSN GLDGNDAKTA NAKESSSQGS NPKKLDDVIG DDGASLSSDQ DVWSAVQERA 600 LVQALKTFPK ETSQRWERVA AAIPGKNVNQ CKKKFALLKE NFRNKKNVV

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MAPKTSVQLI SYSQEIVDGE PIYVSSNCLP IKACKFEPAG HSFHTAALRL SGLFEEEDAD  60
GGEQNVSNDK EQEYVPSSES YSTKGKKKSG AEGKQQDHYA LLGLSHLRYL ATEEQIRKSY  120
RETALKHHPD KQAALLLAEE TETAKQAKKD EIENHFKAIQ EAYEVLIDPA RRRIYDSTDE  180
FDDEIPTDCA PRDFFKVFGP AFMRNGRWSV NQPIPSLGDE STALKEVDSF YNFWYSFKSW  240
REFPNEDEFD LEQAESRDHK RWMERQNAKL TEKARKEDYA RIRALVDNAY KRDPRIQKRK  300
EEEKAEKQKK KEAKYLAKKL QEEEAIRIAE EQRRQKEEEE RLAAEAALHQ KKTREKEKKL  360
LRKERTRFRT LSGPVLSQHL LDVTKDDVES LCLSLEIEQL RNLCEKIEAK EGLEKAKLLK  420
EALGCNHNLE EDQKQDKTPK ENGSVAVNGS VILSSSEKKE KPWGREEIEI LRKGVQKYPK  480
GTSRRWEVIS EYIGTGRSVE EILKATKTVL LQKPDNAKAF DSFLEKRKPA QSIASPLTTR  540
EETEGVSTSN GLDGNDAKTA NAKESSSQGS NPKKLDDVIG DDGASLSSDQ DVWSAVQERA  600
LVQALKTFPK ETSQRWERVA AAIPGKNVNQ CKKKFALLKE NFRNKKNVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11450.1	0.0	MYB family protein