PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100321.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 321aa MW: 35552.6 Da PI: 6.0134

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3e-10	65	108	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT e d+ + +a + + + +W+++a++++ g+t +++k+++ XP_028100321.1 65 SWTREQDKAFENALAIFSEEssdRWEKVAAMVP-GKTVEEIKHHY 108 7***************99*********.********9 PP
2	Myb_DNA-binding	43.2	9e-14	172	216	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+Wk I+r + Rt+ q+ s+ qky XP_028100321.1 172 AWTEEEHRLFLLGLEKYGKGDWKGISRNFVVSRTPTQVASHAQKY 216 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MLYIKVIREM AAVEADDEED LLAFEKKNLS PLQQVSILST EISRKPFRTD PYQRMSTNGT 60 GSSSSWTREQ DKAFENALAI FSEESSDRWE KVAAMVPGKT VEEIKHHYEI LVEDINAIES 120 DLVPLPHYKD SASRAGDFGV GEEGSQFGQM QSDSRHGGKS SRSDQERRRG IAWTEEEHRL 180 FLLGLEKYGK GDWKGISRNF VVSRTPTQVA SHAQKYFIRQ SSANRERRRT SIHDITSVCG 240 GDTSSTPQGQ ITGQVDGVAT MAKPTLSDPH LISAVGVPVD HPSLAEMLSD VRAPTPGSLV 300 SGTSKDMPPM TYLQPHSSDQ K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	2e-84	MYB family protein