PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028099866.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 389aa MW: 42415.9 Da PI: 6.6006

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028099866.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.9	4.5e-17	149	198	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028099866.1 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*****************......55**********************997 PP
2	AP2	44.3	4.4e-14	241	291	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g XP_028099866.1 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 291 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MWDLNDSPDQ RIRDDVSEGC SSPGDDEKGK RVGSVSNSSS SAVVIEEASD DDDGGDRGGR 60 KRSCSKIFGF SVSESDLPVT RQFFPVEDFE MGTTSGGGGG GSNFPRAHWV GVKFCPLIGG 120 GAGGGGIGKS VELSQPLKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVE ADINFSLEDY GDDLKQMSNL TKEEFVHVLR RQSTGFPRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFDP 300 SIYDDELNSA ECSGNAPDHN LDLSLGSRTS ASKQGSQELG GDVQNVAADQ HHAAMAFEVD 360 WHNRGFMPKV FGYCSADISV NINIESLKS

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MWDLNDSPDQ RIRDDVSEGC SSPGDDEKGK RVGSVSNSSS SAVVIEEASD DDDGGDRGGR  60
KRSCSKIFGF SVSESDLPVT RQFFPVEDFE MGTTSGGGGG GSNFPRAHWV GVKFCPLIGG  120
GAGGGGIGKS VELSQPLKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD  180
TAHAAARAYD RAAIKFRGVE ADINFSLEDY GDDLKQMSNL TKEEFVHVLR RQSTGFPRGS  240
SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFDP  300
SIYDDELNSA ECSGNAPDHN LDLSLGSRTS ASKQGSQELG GDVQNVAADQ HHAAMAFEVD  360
WHNRGFMPKV FGYCSADISV NINIESLKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-123	AP2 family protein