PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028099441.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 556aa MW: 60460.2 Da PI: 4.7544

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028099441.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.9e-17	40	87	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+v+++G g+W+++ ++ g+ R++k+c++rw ++l XP_028099441.1 40 KGPWTSAEDAILVDYVRKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP
2	Myb_DNA-binding	50.8	3.8e-16	93	136	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E++ ++++++++G++ W++ a++++ gRt++++k++w++ XP_028099441.1 93 KGAFTPDEEKTIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence
MSHMTNESDD EMLSQDHTGS PLIDEGNCGG SMNGGVVLKK GPWTSAEDAI LVDYVRKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTPDE EKTIIELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQAFQE NQQNQNASGD KGQHDLMQTD 180 ICEIPDVIFD SLKANHGVLP YVPELPDIST SSMLMKGLGS SQCYGSVPPM VHRQKRLRES 240 PTSFSGHDGI VRNEPSPFDQ TPDDNCDNMT SQFFGLSFPY DPDPITKNLL SFSGNQSSHF 300 LINGNFSASK PTNGAVKLEL PSLQYPETDF SSWGSSSPPA LLESVDAFIQ SPPSGTLQSD 360 CLSPRNSGLL DALLYEAKTL STKNQLSDKS SNSSTITPGD KANSSALDIC ETKWEEYGDS 420 ISPLGNSAAS IFNECTPVSV SGSSLDEITP ENFPGSNVKS EADDQTWTMD GETKETATQL 480 DFSRPDALLG SCWLGQSVAC AKDQGIGTDA RAVALGDDLG NDYKHMAAGT ALSPGWGFVS 540 CSWNNMPAVC QMSELP

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence

MSHMTNESDD EMLSQDHTGS PLIDEGNCGG SMNGGVVLKK GPWTSAEDAI LVDYVRKHGE  60
GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFTPDE EKTIIELHAK MGNKWARMAA  120
HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PEVCLQAFQE NQQNQNASGD KGQHDLMQTD  180
ICEIPDVIFD SLKANHGVLP YVPELPDIST SSMLMKGLGS SQCYGSVPPM VHRQKRLRES  240
PTSFSGHDGI VRNEPSPFDQ TPDDNCDNMT SQFFGLSFPY DPDPITKNLL SFSGNQSSHF  300
LINGNFSASK PTNGAVKLEL PSLQYPETDF SSWGSSSPPA LLESVDAFIQ SPPSGTLQSD  360
CLSPRNSGLL DALLYEAKTL STKNQLSDKS SNSSTITPGD KANSSALDIC ETKWEEYGDS  420
ISPLGNSAAS IFNECTPVSV SGSSLDEITP ENFPGSNVKS EADDQTWTMD GETKETATQL  480
DFSRPDALLG SCWLGQSVAC AKDQGIGTDA RAVALGDDLG NDYKHMAAGT ALSPGWGFVS  540
CSWNNMPAVC QMSELP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-134	MYB family protein