PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028098726.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | YABBY | ||||||||
Protein Properties | Length: 210aa MW: 23201.1 Da PI: 7.8953 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 235.2 | 1.5e-72 | 20 | 174 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 sseq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ ll+a + + ++llee +++++nl n+++ +++ t + XP_028098726.1 20 SSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMR--GPLLPAAXD-SFFSPQNLLEEIRSSSSNLLINQQNASESVTPI---- 107 79****************************************7665..566777664.233445599999999999887776655544444.... PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ee+p++p ++rPPekrqrvPsaynrfik+eiqrika+nP+ishreafsaaaknWahfP+ihfgl XP_028098726.1 108 ---RGLEELPKPPAANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPEISHREAFSAAAKNWAHFPHIHFGL 174 ...45789************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence |
MSSSSSAFSP DHHHHLSPPS SEQLCYVHCN FCDTVLAVSV PCSSLFKTVT VRCGHCTNLL 60 SVNMRGPLLP AAXDSFFSPQ NLLEEIRSSS SNLLINQQNA SESVTPIRGL EELPKPPAAN 120 RPPEKRQRVP SAYNRFIKDE IQRIKAGNPE ISHREAFSAA AKNWAHFPHI HFGLLPDQPV 180 KKANMRQQDG EDVLMKDGFL APANMGVSPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 2e-80 | YABBY family protein |