PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098454.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 480aa MW: 52630.1 Da PI: 7.476

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.6	5.3e-17	152	201	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_028098454.1 152 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 201 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence
MLDLNLSILD NEVLANVPES SEEESGTSNS SVVNAEASSS NAGDDDSCST RGDIFAFNFD 60 ILKVTAATTE SEVEGNENRM TRSEFVTRQL FPSIGGVGGL TQGLSSSSPS FLRPNWVDPS 120 LNQATSHGGL AEVRVVKQQV KKSRRGPRPR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG 180 GFDTAHAAAR AYDRAAIKFR GIEADINFNL SDYEDDLKQM TNMTKEEFVH ILRRQSTGFS 240 RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DQAAIKCNGK EAVTNFEPST YDGEMISEAY 300 HEGGNHNLDL NLMISAPSSG DGPKDNGSLR HLQFHPYEVH GARRSNMESP ATTTLGNPTL 360 KGQAMTSDHH PLWTGLHPNF FPNYEEKATR RGIEEGSSQG SPNWAWQMHG GQGNTAPTRV 420 STAASSGFSS AATTTAAFSA SVHPSKLLKP TALHLCFPSS ATASSNYQYY YQMRPLQPPP

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence

MLDLNLSILD NEVLANVPES SEEESGTSNS SVVNAEASSS NAGDDDSCST RGDIFAFNFD  60
ILKVTAATTE SEVEGNENRM TRSEFVTRQL FPSIGGVGGL TQGLSSSSPS FLRPNWVDPS  120
LNQATSHGGL AEVRVVKQQV KKSRRGPRPR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG  180
GFDTAHAAAR AYDRAAIKFR GIEADINFNL SDYEDDLKQM TNMTKEEFVH ILRRQSTGFS  240
RGSSKYRGVT LHKCGRWEAR MGQFLGKKAY DQAAIKCNGK EAVTNFEPST YDGEMISEAY  300
HEGGNHNLDL NLMISAPSSG DGPKDNGSLR HLQFHPYEVH GARRSNMESP ATTTLGNPTL  360
KGQAMTSDHH PLWTGLHPNF FPNYEEKATR RGIEEGSSQG SPNWAWQMHG GQGNTAPTRV  420
STAASSGFSS AATTTAAFSA SVHPSKLLKP TALHLCFPSS ATASSNYQYY YQMRPLQPPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	4e-96	AP2 family protein