PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028097109.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 308aa MW: 34847.9 Da PI: 6.8368

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028097109.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.6	1.8e-17	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k XP_028097109.1 86 KKRRLNLEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139 4557899**********************************************9 PP
2	HD-ZIP_I/II	130.8	5.1e-42	85	176	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++da+k++n++L++++++L++e+ XP_028097109.1 85 EKKRRLNLEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQFDAIKADNDALQSQNQKLQAEII 176 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
MTCIGMAFFQ SNFMLQTPHE DGHHHHHQPP TSLGPILPPC TSQDFHGVAS LLGKRSMSFS 60 AIEVCDHETN GVEDDLSDDG SQAGEKKRRL NLEQVKTLEK NFELGNKLEP ERKMQLARAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KRQFDAIKAD NDALQSQNQK LQAEIIALKN 180 REPTESINLN KETEGSSSNR SENSSEIKLD ISTRTPPAMD SPSSNHHHGH PIIPTSSSRP 240 LFPPSIITRP TSAAMAHLFL NSSSSSRQPD HKIIDHQNAV KEESFSNMFC AIDDQSGFWP 300 WLEQQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-118	HD-ZIP family protein