PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096136.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 525aa MW: 59843.3 Da PI: 6.2422

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096136.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.8	5.1e-27	60	143	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r++++ ++r++ lk+plW++vs+k+++ g++r+ k+Ckek+en+ k++k++ke +++r ++s+++++f+qle XP_028096136.1 60 RWPREETLALLKIRSDIDLAFRDSTLKAPLWDQVSRKLAALGYHRNGKKCKEKFENIYKYHKRTKECRSSR--QKSKSYRFFEQLE 143 8******************************************************************97..67778****97 PP
2	trihelix	97.2	1.5e-30	366	450	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev aLi++r++++ +++++ k+plWeevs m++ g++r++k+Ckekwen+nk++k++k+++kkr +e+s+tcpyf+ le XP_028096136.1 366 RWPKAEVEALIRLRTNLDLEYQDNGPKGPLWEEVSLSMKKIGYNRNAKRCKEKWENINKYFKRVKDSNKKR-PEDSKTCPYFEMLE 450 8*******************************************************************8.99*******997 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MMLEPAGLLQ NSAVGSGGAT VTTAVASAVN LENEEEGGGG FGEEETTKVE EGDRSLTGNR 60 WPREETLALL KIRSDIDLAF RDSTLKAPLW DQVSRKLAAL GYHRNGKKCK EKFENIYKYH 120 KRTKECRSSR QKSKSYRFFE QLELFASQSS LPSVIQPSLT ETTMATTEMT MTDMEIKPSS 180 VAQEQEQEQD HHQHQHVTIP CSIPNHPTSS AAAELVMSTS TSTTSTSGKE SEINGKKRKF 240 VNYFERLMKE VLEKQEKLQE KFIDALEKCE KDRIAREEAW KMQELARIKR EQEMIAEERA 300 IAAAKDAALI SFLQKISEQA SPVQLPQNPT PTPIPVSIPI PPEKVNEKQG NDIITENSTQ 360 VISSSRWPKA EVEALIRLRT NLDLEYQDNG PKGPLWEEVS LSMKKIGYNR NAKRCKEKWE 420 NINKYFKRVK DSNKKRPEDS KTCPYFEMLE SIYERKSKKV DNSDNSGCYS KPEDILMLMM 480 GQQQQQPPPQ QQQQQQQQQR PESLTEDGES ENTDQNQEEK RSGRI

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MMLEPAGLLQ NSAVGSGGAT VTTAVASAVN LENEEEGGGG FGEEETTKVE EGDRSLTGNR  60
WPREETLALL KIRSDIDLAF RDSTLKAPLW DQVSRKLAAL GYHRNGKKCK EKFENIYKYH  120
KRTKECRSSR QKSKSYRFFE QLELFASQSS LPSVIQPSLT ETTMATTEMT MTDMEIKPSS  180
VAQEQEQEQD HHQHQHVTIP CSIPNHPTSS AAAELVMSTS TSTTSTSGKE SEINGKKRKF  240
VNYFERLMKE VLEKQEKLQE KFIDALEKCE KDRIAREEAW KMQELARIKR EQEMIAEERA  300
IAAAKDAALI SFLQKISEQA SPVQLPQNPT PTPIPVSIPI PPEKVNEKQG NDIITENSTQ  360
VISSSRWPKA EVEALIRLRT NLDLEYQDNG PKGPLWEEVS LSMKKIGYNR NAKRCKEKWE  420
NINKYFKRVK DSNKKRPEDS KTCPYFEMLE SIYERKSKKV DNSDNSGCYS KPEDILMLMM  480
GQQQQQPPPQ QQQQQQQQQR PESLTEDGES ENTDQNQEEK RSGRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-55	Trihelix family protein