PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028095973.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 481aa MW: 53072.5 Da PI: 8.4042

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028095973.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.3	6.6e-17	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +l+++v+++G g+W+++ + g+ R++k+c++rw ++l XP_028095973.1 17 KGPWTTAEDAILIEYVRKHGEGNWNAVQKNCGLLRCGKSCRLRWANHL 64 79****************************99********9986 PP
2	Myb_DNA-binding	49.5	9.8e-16	70	113	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE++ ++d++++lG++ W++ a+++ gRt++++k++w++ XP_028095973.1 70 KGAFTPEEEKTIIDLHARLGNK-WARMANKLS-GRTDNEIKNYWNT 113 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence
MNGGGVGGGS PQLAVKKGPW TTAEDAILIE YVRKHGEGNW NAVQKNCGLL RCGKSCRLRW 60 ANHLRPNLKK GAFTPEEEKT IIDLHARLGN KWARMANKLS GRTDNEIKNY WNTRVKRLQR 120 AGLPIYPENI SQRYDQPQPQ APQPQLNNNN HHQKIPNSFS PSFSALLSSS SSPSPIFSSL 180 LSSSAPSRLT TQTPNSTPLS LSSILTVSQE CTNKLFAAHP PFFISLQSQP SQSILFATTT 240 PNQCSPPSPP STTTMAASFN PHGGLSPQDT ETDPFFAPIS VVLTIVDGQR QSRTSNHSSA 300 SSCGTLSISD LEEDTTRIDT LKKEYANNNA TGNEKKDNAT GNEKKDNANT FSNKRCINLL 360 LMKIDLQRSK AERLHKKKMM NSLGKSTGFW MKENDQWEEM FDMDDDLSSL LNNFPMTVPV 420 PYWYDAIGTS SFGQSSNMMD GYLGLNNLPE ASPSAVATTM ETTNPDQTRS LCCWNNMPDI 480 C

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence

MNGGGVGGGS PQLAVKKGPW TTAEDAILIE YVRKHGEGNW NAVQKNCGLL RCGKSCRLRW  60
ANHLRPNLKK GAFTPEEEKT IIDLHARLGN KWARMANKLS GRTDNEIKNY WNTRVKRLQR  120
AGLPIYPENI SQRYDQPQPQ APQPQLNNNN HHQKIPNSFS PSFSALLSSS SSPSPIFSSL  180
LSSSAPSRLT TQTPNSTPLS LSSILTVSQE CTNKLFAAHP PFFISLQSQP SQSILFATTT  240
PNQCSPPSPP STTTMAASFN PHGGLSPQDT ETDPFFAPIS VVLTIVDGQR QSRTSNHSSA  300
SSCGTLSISD LEEDTTRIDT LKKEYANNNA TGNEKKDNAT GNEKKDNANT FSNKRCINLL  360
LMKIDLQRSK AERLHKKKMM NSLGKSTGFW MKENDQWEEM FDMDDDLSSL LNNFPMTVPV  420
PYWYDAIGTS SFGQSSNMMD GYLGLNNLPE ASPSAVATTM ETTNPDQTRS LCCWNNMPDI  480
C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	2e-70	MYB family protein