PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028094842.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

ARR-B

Protein Properties

Length: 497aa MW: 55626.7 Da PI: 9.8897

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028094842.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	62.9	6e-20	161	214	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+ Wt LH++Fv+av++L G +kA+Pk+il++m+ + ++++ v+ HL kYR XP_028094842.1 161 KKRVSWTGVLHNKFVNAVREL-GVDKAVPKKILNIMNEPEISRASVACHLWKYRN 214 68*****************.******************************6 PP
2	Response_reg	72.3	2e-24	31	139	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + ++ ++ +l+k +y +v+++++++eal++l++k+ +D++++D+ m +m+G+ell+ i e ++ +i+++ ++++e + + +k G XP_028094842.1 31 VLVVDDDVVCLKCVTALLNKCRY-KVTTTTKATEALKMLRKKKekYDIVITDVIMLDMNGFELLEIIGLEM-DMLVIMMSVNDDKESVMKGVKHG 123 89*******************.***********777777****************996644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a+d+l Kp ee+ + XP_028094842.1 124 ARDYLIKPLRLEEVKN 139 *******9999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MSKTEGVHVS LNRAAPPQSR VNANFPEGLS VLVVDDDVVC LKCVTALLNK CRYKVTTTTK 60 ATEALKMLRK KKEKYDIVIT DVIMLDMNGF ELLEIIGLEM DMLVIMMSVN DDKESVMKGV 120 KHGARDYLIK PLRLEEVKNI WQHVVRKNLF NTTKSGTMQK KKRVSWTGVL HNKFVNAVRE 180 LGVDKAVPKK ILNIMNEPEI SRASVACHLW KYRNALRKEN TIAKMTQESK NNINSNRTNR 240 LLSDTITTSC INQGLNTINH HNRFAEQDMS TGITSFGSRL QTFGASTSNA KLLQQNQLPP 300 KVVADHMRPT VLGSVPPSQF FAANPSPHHE LNGMRFHSIN SRTEIFDDNV KMSSSQLPSF 360 NTGESGPSSM PVSFGPYSCP LAAVNLGGVP FQILGDASNQ LNPISQPDSL AMLLPGQHEG 420 RNLANLKVKE EPINFPFDMR QITDDSIRKG QFVQHRYPFE NTEREIRSHH NNSSSSSDDG 480 LLSIMVKQFW SNSAPKL

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MSKTEGVHVS LNRAAPPQSR VNANFPEGLS VLVVDDDVVC LKCVTALLNK CRYKVTTTTK  60
ATEALKMLRK KKEKYDIVIT DVIMLDMNGF ELLEIIGLEM DMLVIMMSVN DDKESVMKGV  120
KHGARDYLIK PLRLEEVKNI WQHVVRKNLF NTTKSGTMQK KKRVSWTGVL HNKFVNAVRE  180
LGVDKAVPKK ILNIMNEPEI SRASVACHLW KYRNALRKEN TIAKMTQESK NNINSNRTNR  240
LLSDTITTSC INQGLNTINH HNRFAEQDMS TGITSFGSRL QTFGASTSNA KLLQQNQLPP  300
KVVADHMRPT VLGSVPPSQF FAANPSPHHE LNGMRFHSIN SRTEIFDDNV KMSSSQLPSF  360
NTGESGPSSM PVSFGPYSCP LAAVNLGGVP FQILGDASNQ LNPISQPDSL AMLLPGQHEG  420
RNLANLKVKE EPINFPFDMR QITDDSIRKG QFVQHRYPFE NTEREIRSHH NNSSSSSDDG  480
LLSIMVKQFW SNSAPKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	69	74	RKKKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31920.1	3e-59	ARR-B family protein