PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028094658.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 612aa    MW: 67716.7 Da    PI: 6.2501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028094658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-191775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le++++++++ps ++r++L +++    +++ rq+kvWFqNrR +ek+
  XP_028094658.1 17 KYVRYTPEQVEALERVYHECPKPSSNRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START175.14.2e-551613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+vi +   g+++l 
  XP_028094658.1 161 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAVRACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVLNVIPTTngGTIELL 254
                     789*******************************************************.8888888888***************87777****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  + +g +v++++S++++q+ p+    +++vRae+lpSg+li+++++g+s +++v+h++l++++++++lr+l+
  XP_028094658.1 255 YMQLYAPTTLAPaRDFWLLRYTSVMDDGNLVVCERSLSNTQNGPSmppVQNFVRAEMLPSGYLIRSCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 349
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++ +l+++++
  XP_028094658.1 350 ESSTVLAQKTTMMALRQLRQ 369
                     ***************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    
MITMSCKDGK GVMDNGKYVR YTPEQVEALE RVYHECPKPS SNRRQQLIRE CPILSNIEPR  60
QIKVWFQNRR CREKQRKESS RLQSVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  120
TQNTTLVTKD GSCESVVTSG QQHLAPQHPP KDASPAGLLS IAEETLTEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAVRAC GLVGLEPTRV AEILKDRPSW FRDCRAVDVL  240
NVIPTTNGGT IELLYMQLYA PTTLAPARDF WLLRYTSVMD DGNLVVCERS LSNTQNGPSM  300
PPVQNFVRAE MLPSGYLIRS CEGGGSIIHI VDHMNLEAWS VPEVLRPLYE SSTVLAQKTT  360
MMALRQLRQI AQEVSQSNVT NWSRRPAALR ALSQRLSRGF NEALNGFTDE GWSMMENDGM  420
DDVSILVNSS PDKLMGLNLT FSNGFPAVSN AVLCAKASML LQDLINDGSI LNVPPAILLR  480
FLREHRSEWA DSSIDAYSAA AVKVGPCILP RARAGSFGGQ VILPLAHTIE HEELLEVIKL  540
EGVGHYPEDA IMPRDMFLLQ LCSGMDENAV GTCAELIFAP IDASFADDAP LLPSGFRIIP  600
LDSGKVSIYI TF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.30.0HD-ZIP family protein