PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028094316.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 998aa MW: 112005 Da PI: 4.9272

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028094316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_028094316.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.6e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_028094316.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 998 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIQTRQR KRKRKGIDYN AEIPFEKKPP PGFFDVADED QPVEQLKFPT 240 TIEELEGEKR TDREARLRKQ DIARNKIAQR QDAPSAILQA NKLNDPEAVR KRSKLMLPAP 300 QISDNELEEI AKMGYASDLL AGSEELIEGN GATRALLANY AQTPRQGMTP LRAPQRTPAG 360 KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGG 420 GGMTPRLGMT PSRDSFGLTP KGTPIRDELH INEDVDMHES AKLELRRQAD LRRNLRSGLS 480 NLPQPKNEYQ IVIQPVPEDN EEPEEHIEED MSDRMAREKA EKEARQQLLL KKRSKVLQRE 540 LPRPPAASLE LIKNSLTRAD EDKSSFVPPT LIEQADEMIR KELLSLLDHD NAKYPLDEKA 600 DKDNKKGAKR AANRKSVSVP VIEDFEENEL KEAGYFIKEE VQFLRLAMGH ENESVDAFVE 660 AHKTCLNDIV YFPTRNGYGL SSVAGNMEKL AALQNEFEIV KKRMDDDTKK AQRLEQKIKL 720 LTNGYQMRAG KLWSQIEATF KQMDTAGTEL ECFQALQKQE QLAASHRINV LWEEVQKQKE 780 LERTLQKRYG DLVAEKERIQ SLMDAFRVQE EIAAKNRALE LANAAANETA EPPADEIPSQ 840 EIDAAPVQAN ASPKQDMDAD GVVENATPVV DVSSSDIMPS VSADDATQLK SVDENHSSDI 900 PDQNSAVKLN INSDLTDGDK ISMCGDTVNG TIGENLTSPE VAGGDLSAKD QQNTGEDGIE 960 DSILTRPEDI VPETAEDGNA DENRQVSMEV DGVNMQDA

Sequence ? help Back to Top

Protein Sequence Length: 998 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIQTRQR KRKRKGIDYN AEIPFEKKPP PGFFDVADED QPVEQLKFPT  240
TIEELEGEKR TDREARLRKQ DIARNKIAQR QDAPSAILQA NKLNDPEAVR KRSKLMLPAP  300
QISDNELEEI AKMGYASDLL AGSEELIEGN GATRALLANY AQTPRQGMTP LRAPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPEL HPSDFSGVTP KKREIQTPNP MLTPSATPGG  420
GGMTPRLGMT PSRDSFGLTP KGTPIRDELH INEDVDMHES AKLELRRQAD LRRNLRSGLS  480
NLPQPKNEYQ IVIQPVPEDN EEPEEHIEED MSDRMAREKA EKEARQQLLL KKRSKVLQRE  540
LPRPPAASLE LIKNSLTRAD EDKSSFVPPT LIEQADEMIR KELLSLLDHD NAKYPLDEKA  600
DKDNKKGAKR AANRKSVSVP VIEDFEENEL KEAGYFIKEE VQFLRLAMGH ENESVDAFVE  660
AHKTCLNDIV YFPTRNGYGL SSVAGNMEKL AALQNEFEIV KKRMDDDTKK AQRLEQKIKL  720
LTNGYQMRAG KLWSQIEATF KQMDTAGTEL ECFQALQKQE QLAASHRINV LWEEVQKQKE  780
LERTLQKRYG DLVAEKERIQ SLMDAFRVQE EIAAKNRALE LANAAANETA EPPADEIPSQ  840
EIDAAPVQAN ASPKQDMDAD GVVENATPVV DVSSSDIMPS VSADDATQLK SVDENHSSDI  900
PDQNSAVKLN INSDLTDGDK ISMCGDTVNG TIGENLTSPE VAGGDLSAKD QQNTGEDGIE  960
DSILTRPEDI VPETAEDGNA DENRQVSMEV DGVNMQDA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIQTRQRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein