PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028093628.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 376aa MW: 42621.5 Da PI: 5.2113

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028093628.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.3	4.2e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_028093628.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53.8	4.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia+ ++ gRt++++k++w+++ XP_028093628.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAAQLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MGRTPCCEKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAAQLPGRT DNEIKNYWNT HIRKRLLRMG 120 IDPVTHSPRL DLLELSSILS SSLYNSSQMN LSRLLGLQQP LVNPEILRLA TSLLSSQQCE 180 NPNPNFLLQN VQENQVCNPN QVQNQLVLPN QNQTLLQEIE ENHEIPVCTT LSTPCVPFAS 240 DAQLMEPNVH QFSSNLTDFS SQNCQLNHWQ SHEMPSNLTE DYGALSSYGY YASDQSIMDP 300 HPSDQNSNFQ SYNSNNFSFA SGLSTLTTPS SSPAPLNSNS TYINSSSTVT EDERESYCSG 360 MLKFEIPDML DVSEYM

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MGRTPCCEKN GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAAQLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLELSSILS SSLYNSSQMN LSRLLGLQQP LVNPEILRLA TSLLSSQQCE  180
NPNPNFLLQN VQENQVCNPN QVQNQLVLPN QNQTLLQEIE ENHEIPVCTT LSTPCVPFAS  240
DAQLMEPNVH QFSSNLTDFS SQNCQLNHWQ SHEMPSNLTE DYGALSSYGY YASDQSIMDP  300
HPSDQNSNFQ SYNSNNFSFA SGLSTLTTPS SSPAPLNSNS TYINSSSTVT EDERESYCSG  360
MLKFEIPDML DVSEYM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	3e-97	MYB family protein