PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028090983.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 452aa MW: 52504.9 Da PI: 6.5959

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028090983.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	78	1.4e-24	126	223	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e++ ++ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ +++++++ ++d XP_028090983.1 126 KWTDKMVRLLITAVSYIGEDVAAEYgsgtrrkyvnlQKKGKWKSVSKVMAERGHYVSPQQCEDKFNDLNKRYKRLNEILGRGtSCQVVERPELLD 220 7************999999975333556778888********************************************6699999999999 PP trihelix 84 qle 86 ++ XP_028090983.1 221 MMD 223 887 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MEGNLSSGNM IPGSSSFGGL DLKGSMRVHQ QQQQQQQQPL TLHQQHHSLP RQGLMVHPSI 60 HENFPLTMSS MQDCDQTIPL ADFSKGGERG KNSASDEDEP SFMEDTIDGH NDGNRGKKGM 120 PWQRVKWTDK MVRLLITAVS YIGEDVAAEY GSGTRRKYVN LQKKGKWKSV SKVMAERGHY 180 VSPQQCEDKF NDLNKRYKRL NEILGRGTSC QVVERPELLD MMDHISEKAK EEVRKILSSK 240 HLFYEEMCSY HNSNRLHLPH DPELQRSLRL ALRSRDDHDN IDVRRHPQDD LDEDDQDAET 300 DDRDEFEENH GLHGDRRAMY GVWGSAKRMK PCQGQEDITL GSSFTALDCN KTFSSHPQNV 360 QGDTNEGLPE GVKANLLQRQ WMKHRSLQLE EQKLQIQAQM LELEKERFKW QRFCRKKDRE 420 LEMMRMENER MKLENEHMAL ELKQKEMAAE FN

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MEGNLSSGNM IPGSSSFGGL DLKGSMRVHQ QQQQQQQQPL TLHQQHHSLP RQGLMVHPSI  60
HENFPLTMSS MQDCDQTIPL ADFSKGGERG KNSASDEDEP SFMEDTIDGH NDGNRGKKGM  120
PWQRVKWTDK MVRLLITAVS YIGEDVAAEY GSGTRRKYVN LQKKGKWKSV SKVMAERGHY  180
VSPQQCEDKF NDLNKRYKRL NEILGRGTSC QVVERPELLD MMDHISEKAK EEVRKILSSK  240
HLFYEEMCSY HNSNRLHLPH DPELQRSLRL ALRSRDDHDN IDVRRHPQDD LDEDDQDAET  300
DDRDEFEENH GLHGDRRAMY GVWGSAKRMK PCQGQEDITL GSSFTALDCN KTFSSHPQNV  360
QGDTNEGLPE GVKANLLQRQ WMKHRSLQLE EQKLQIQAQM LELEKERFKW QRFCRKKDRE  420
LEMMRMENER MKLENEHMAL ELKQKEMAAE FN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	405	417	KERFKWQRFCRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	1e-139	Trihelix family protein