PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028090971.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

TCP

Protein Properties

Length: 466aa MW: 50399.3 Da PI: 8.1158

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028090971.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	118.8	6.7e-37	80	234	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaesssssa 82 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a ++i+el++ + +ss++ XP_028090971.1 80 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLLKAAAKSIDELPSIntsfpdtpqqlsdeK-----------RSSAG 163 689*********************************************************99554443333322220...........22222 PP TCP 83 s...nsssg.....................kaaksaakskksqksaasalnlak..esrakarararertrekm 130 + + + +++a+s+ s++s+ s l+l++ esr kar+rarer++ + XP_028090971.1 164 TeqgF---DsadleldggdqtfhhqqhqqhVSLSKSACSSASETSKGSGLSLSQrsESRIKARERARERKAGRE 234 22221...1444445555555555555555556666688889999999999999889*********987554 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MEVDEIQTQG HKFPRIGNGR GDCNKIGQKG EEQYPDDEED GEIKRSGGGR SGGGIEIGGG 60 GVGRLCGWPS SRIVRVSRAS GGKDRHSKVW TSKGLRDRRV RLSVTTAIQF YDLQDRLGYD 120 QPSKAVEWLL KAAAKSIDEL PSINTSFPDT PQQLSDEKRS SAGTEQGFDS ADLELDGGDQ 180 TFHHQQHQQH VSLSKSACSS ASETSKGSGL SLSQRSESRI KARERARERK AGREWKEKEK 240 ESHESVNHPQ NINPISQSSF TELLTGGINN VNSATTTASP NGSAANLFQK STRPQWSSAP 300 MDYFTSGLLN SSPSRNPHSS GFSGQIHLGN SLPPSMAISQ FSLTADHHHH HHPELQHFSF 360 VPDHLIPVST AGVGGDYNLN FTISSGGLAG FNRGTLQSNS PSLLPHVQRL STIDGSNVPF 420 FIGTAASNAA PVENHHQFPA GLDGRLQLCY GDGRGRQSDQ KGKGKH

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MEVDEIQTQG HKFPRIGNGR GDCNKIGQKG EEQYPDDEED GEIKRSGGGR SGGGIEIGGG  60
GVGRLCGWPS SRIVRVSRAS GGKDRHSKVW TSKGLRDRRV RLSVTTAIQF YDLQDRLGYD  120
QPSKAVEWLL KAAAKSIDEL PSINTSFPDT PQQLSDEKRS SAGTEQGFDS ADLELDGGDQ  180
TFHHQQHQQH VSLSKSACSS ASETSKGSGL SLSQRSESRI KARERARERK AGREWKEKEK  240
ESHESVNHPQ NINPISQSSF TELLTGGINN VNSATTTASP NGSAANLFQK STRPQWSSAP  300
MDYFTSGLLN SSPSRNPHSS GFSGQIHLGN SLPPSMAISQ FSLTADHHHH HHPELQHFSF  360
VPDHLIPVST AGVGGDYNLN FTISSGGLAG FNRGTLQSNS PSLLPHVQRL STIDGSNVPF  420
FIGTAASNAA PVENHHQFPA GLDGRLQLCY GDGRGRQSDQ KGKGKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	54	GGGRSGGG
2	48	55	GGGRSGGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30210.2	1e-38	TCP family protein