PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089699.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Trihelix

Protein Properties

Length: 360aa MW: 39444.6 Da PI: 10.4079

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089699.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	55.8	1.2e-17	51	137	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v Liea++ +++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + ++ + s++p+f +l+ XP_028089699.1 51 EWSEGAVSSLIEAYEAKWTLRNRAKLKGQDWEDVAKHVssrsNSTKSPKTQTQCKNKIESMKKRYRSESSSAAAA---DGSSWPLFPRLD 137 5***********************************88777778889999*************999984...5557***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MDDKPPPPPP QPNHHHHNRS LHLSKTTPPP PPPVRSSNGG GGGGDRLKRD EWSEGAVSSL 60 IEAYEAKWTL RNRAKLKGQD WEDVAKHVSS RSNSTKSPKT QTQCKNKIES MKKRYRSESS 120 SAAAADGSSW PLFPRLDLLL RGSSTSGAPP PPHAVPPPPP PPPPPPLRNP PLMLLEQSLP 180 PPPPPPPLPP PPKPSQPSPP APCPVGIAEN SDASNGVDRR AKEDGVDPPS MNTDSSTTPA 240 AAAAAFYNDE AKEKDKEKLR NLKTRSSLGK KKTIRRRKEE WEVGEKIIRR LAEALVRSEE 300 VRMETMREIE KMRAEAEAKR GEMDLQRTQI IANTQLEIAR LFAASAIANN VDSSLRIGRH

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MDDKPPPPPP QPNHHHHNRS LHLSKTTPPP PPPVRSSNGG GGGGDRLKRD EWSEGAVSSL  60
IEAYEAKWTL RNRAKLKGQD WEDVAKHVSS RSNSTKSPKT QTQCKNKIES MKKRYRSESS  120
SAAAADGSSW PLFPRLDLLL RGSSTSGAPP PPHAVPPPPP PPPPPPLRNP PLMLLEQSLP  180
PPPPPPPLPP PPKPSQPSPP APCPVGIAEN SDASNGVDRR AKEDGVDPPS MNTDSSTTPA  240
AAAAAFYNDE AKEKDKEKLR NLKTRSSLGK KKTIRRRKEE WEVGEKIIRR LAEALVRSEE  300
VRMETMREIE KMRAEAEAKR GEMDLQRTQI IANTQLEIAR LFAASAIANN VDSSLRIGRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-48	Trihelix family protein