PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028088720.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 691aa    MW: 76482.7 Da    PI: 5.3502
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028088720.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.4e-173489156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +r+ +++t+ q++e+e++F++ ++p+ ++r+ L+++lgL+  q+k+WFqN+R++ k
  XP_028088720.1 34 KRRYQRHTQFQIQEMENFFKEYPHPDDKQRKVLSRELGLEPLQIKFWFQNKRTQIK 89
                    68999***********************************************9876 PP
2START156.42.3e-492274443206
                     HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     a +a++e+  +++ ++p+W          +n+de+l+ f+++ +     ++ ea+r  ++v m++ + ve+l+d   +W++ +     +   +e+
  XP_028088720.1 227 AVTAMEEFTMMVQIGDPLWIPGIdsnsFVLNEDEYLRMFPRAVGlkapdFKREASRGAAIVLMPSINIVEILMDEE-KWSNFFSviiaRGVNIET 320
                     6799***************97775455569*********99776********************************.*******99998888888 PP

                     ECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  85 issg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     +s g     gal +m+ e+q+lsp vp R+f fvRy++q+g+g+w++vd Sv+s ++      +v+ +++pSg+li++++ng++kvtw+ehv+++
  XP_028088720.1 321 LSAGvqdlnGALKVMSGEFQVLSPQVPaREFNFVRYCKQHGDGSWAVVDASVESLRPSL----LVKNRRRPSGCLIQDLPNGYTKVTWIEHVEVD 411
                     8888888************************************************9964....8******************************* PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                      r +++++r+lv+ gla+gak+w++tl+rq e+
  XP_028088720.1 412 VRGVSNIYRPLVNCGLAFGAKRWLSTLNRQSER 444
                     *****************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    
MSEEEVESKF GGSDNNQEGG YDEDQGESNH LRKKRRYQRH TQFQIQEMEN FFKEYPHPDD  60
KQRKVLSREL GLEPLQIKFW FQNKRTQIKM RNERIENTQL RNNNEKLRAE NILYKEALSN  120
SFCPSCGSQA DLGHISLEEY NLRLENARLQ KEADEMSTIA ANYVGKPLLD QVMSPPLSPG  180
SFENEVLGGQ PSAGEGELLL SAPGDLFGSN CGPTSEHYEK QMIFKMAVTA MEEFTMMVQI  240
GDPLWIPGID SNSFVLNEDE YLRMFPRAVG LKAPDFKREA SRGAAIVLMP SINIVEILMD  300
EEKWSNFFSV IIARGVNIET LSAGVQDLNG ALKVMSGEFQ VLSPQVPARE FNFVRYCKQH  360
GDGSWAVVDA SVESLRPSLL VKNRRRPSGC LIQDLPNGYT KVTWIEHVEV DVRGVSNIYR  420
PLVNCGLAFG AKRWLSTLNR QSERLAIVQP TNLSPSDVGK KSMMELAERM VISFCGGVGA  480
SATHTWTTLT GSGADDIRVM TRRSIGDRGR PPGISLSAVT SFWLPAPVKE VFDFLRDAHH  540
RNEWDILSSG GVIQEIAHIA NGHRAETCIS LLRVNSIFGD QNNMLILQES SIDPTGSFVI  600
YAPVDGTAMN TVLHGGNPDN VALLPSGFAV LPDGPSRHGS GIGEANPGGS LVTVSFQILV  660
DSTPTVTIGF VATVNNLITC TVERIKVAME N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0HD-ZIP family protein