PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028088641.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 750aa    MW: 82605.2 Da    PI: 6.0261
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028088641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.72.2e-1954110156
                     TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe++F++  r+p+ +er eL kkl+L+ +qVk+WFqNrR++ k
  XP_028088641.1  54 KKKYHRHTPHQIQELENYFNNvRRHPDDKERLELGKKLSLDSKQVKFWFQNRRTQLK 110
                     79999****************9*******************************9987 PP
2START175.82.7e-552604841206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ + p+Wv+s     e +n +e++++ ++  +     + +ea ra+g+ + ++  lve+l+d + +W+e+++    + +++
  XP_028088641.1 260 ELALRAMDELVKLAQIDNPLWVRSLdggrEVLNHEEYMRICPPCIGvkpsgFVTEATRATGMTIINSLALVETLMDAN-RWTEMFPsmigRTSII 353
                     5899************************99************9988999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vi +g       alqlm  e+qalsplvp R   f+R+++q+ +g+w++vdvSvds ++ +  + +v +++lpSg+ +++++ng+sk+ wveh 
  XP_028088641.1 354 DVIFNGmagsrnCALQLMHVEFQALSPLVPvRPMNFLRFCKQHAEGVWAVVDVSVDSIREFSDAQTFVNCRRLPSGFFVQDMPNGYSKIMWVEHS 448
                     ***********************************************************9999******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++  h l+r+l++sg+ +ga++w+atlqrqce+
  XP_028088641.1 449 EYDESAAHHLYRPLLRSGMGFGAQRWLATLQRQCEC 484
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    
MEGLDEMALM GGNFDPSLMG RIKEDGNESR SGSDNFEGGS GDDQDATGDK PQKKKKYHRH  60
TPHQIQELEN YFNNVRRHPD DKERLELGKK LSLDSKQVKF WFQNRRTQLK TQVERFESSI  120
LKRQHEELMM ENISMKEGMR NPICGNCGGP AILGDVSIEE HNLKVENARL KDELNRISIL  180
ANKFLGRPIS SLAGSIPPLS SSCLELAVGR NGFGGSVDTT FPIGLDSKDW VLNALTMAPT  240
LTTIGMSGID IPYEKAIFLE LALRAMDELV KLAQIDNPLW VRSLDGGREV LNHEEYMRIC  300
PPCIGVKPSG FVTEATRATG MTIINSLALV ETLMDANRWT EMFPSMIGRT SIIDVIFNGM  360
AGSRNCALQL MHVEFQALSP LVPVRPMNFL RFCKQHAEGV WAVVDVSVDS IREFSDAQTF  420
VNCRRLPSGF FVQDMPNGYS KIMWVEHSEY DESAAHHLYR PLLRSGMGFG AQRWLATLQR  480
QCECLAVLMS SSISSEDNPG VTPTGRRNMV KLAQRMTRNF CAGVCATMHM WQLVQVGNVG  540
EDARLMIRNS MDNPGEPPGL VLSATTSVWM PVSHQRLFDF LRNEQTRSQW DELSHGGPMQ  600
EMVRITTGQD CGNCVSLLRA TAANTNQNAM LILQETQTDA SSSLIVYTAV DIPAMQAVMS  660
GGDSTSVALL PSGFAVVPDG FPDSVGPSNC DGASVRERGG SGSGSLLTVG FQILVNNPPS  720
AKLTMESVDT VNNLISRTIQ RIKAALNCAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein