PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028088640.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 805aa    MW: 88087.4 Da    PI: 6.25
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028088640.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-19109165156
                     TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe++F++  r+p+ +er eL kkl+L+ +qVk+WFqNrR++ k
  XP_028088640.1 109 KKKYHRHTPHQIQELENYFNNvRRHPDDKERLELGKKLSLDSKQVKFWFQNRRTQLK 165
                     79999****************9*******************************9987 PP
2START175.63.1e-553155391206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela++a++elvk+a+ + p+Wv+s     e +n +e++++ ++  +     + +ea ra+g+ + ++  lve+l+d + +W+e+++    + +++
  XP_028088640.1 315 ELALRAMDELVKLAQIDNPLWVRSLdggrEVLNHEEYMRICPPCIGvkpsgFVTEATRATGMTIINSLALVETLMDAN-RWTEMFPsmigRTSII 408
                     5899************************99************9988999999**************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +vi +g       alqlm  e+qalsplvp R   f+R+++q+ +g+w++vdvSvds ++ +  + +v +++lpSg+ +++++ng+sk+ wveh 
  XP_028088640.1 409 DVIFNGmagsrnCALQLMHVEFQALSPLVPvRPMNFLRFCKQHAEGVWAVVDVSVDSIREFSDAQTFVNCRRLPSGFFVQDMPNGYSKIMWVEHS 503
                     ***********************************************************9999******************************** PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++  h l+r+l++sg+ +ga++w+atlqrqce+
  XP_028088640.1 504 EYDESAAHHLYRPLLRSGMGFGAQRWLATLQRQCEC 539
                     **********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    
MSFGGFIGNR GGGSGGDSPY NTMSTATIGQ PPPVNPPIAQ PFFNSPAASV ACKSRMEGLD  60
EMALMGGNFD PSLMGRIKED GNESRSGSDN FEGGSGDDQD ATGDKPQKKK KYHRHTPHQI  120
QELENYFNNV RRHPDDKERL ELGKKLSLDS KQVKFWFQNR RTQLKTQVER FESSILKRQH  180
EELMMENISM KEGMRNPICG NCGGPAILGD VSIEEHNLKV ENARLKDELN RISILANKFL  240
GRPISSLAGS IPPLSSSCLE LAVGRNGFGG SVDTTFPIGL DSKDWVLNAL TMAPTLTTIG  300
MSGIDIPYEK AIFLELALRA MDELVKLAQI DNPLWVRSLD GGREVLNHEE YMRICPPCIG  360
VKPSGFVTEA TRATGMTIIN SLALVETLMD ANRWTEMFPS MIGRTSIIDV IFNGMAGSRN  420
CALQLMHVEF QALSPLVPVR PMNFLRFCKQ HAEGVWAVVD VSVDSIREFS DAQTFVNCRR  480
LPSGFFVQDM PNGYSKIMWV EHSEYDESAA HHLYRPLLRS GMGFGAQRWL ATLQRQCECL  540
AVLMSSSISS EDNPGVTPTG RRNMVKLAQR MTRNFCAGVC ATMHMWQLVQ VGNVGEDARL  600
MIRNSMDNPG EPPGLVLSAT TSVWMPVSHQ RLFDFLRNEQ TRSQWDELSH GGPMQEMVRI  660
TTGQDCGNCV SLLRATAANT NQNAMLILQE TQTDASSSLI VYTAVDIPAM QAVMSGGDST  720
SVALLPSGFA VVPDGFPDSV GPSNCDGASV RERGGSGSGS LLTVGFQILV NNPPSAKLTM  780
ESVDTVNNLI SRTIQRIKAA LNCAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein