PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028088415.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

HD-ZIP

Protein Properties

Length: 334aa MW: 37415.2 Da PI: 4.4955

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028088415.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	95	148	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ Fe ++++ +++ +LAk lgL+ rq+ +WFqNrRa++k XP_028088415.1 95 KKRRLTPDQVQFLEQSFEVENKLEPDRKIQLAKDLGLQPRQIAIWFQNRRARWK 148 5678*************************************************9 PP
2	HD-ZIP_I/II	128.1	3.6e-41	94	184	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ +qv++LE+sFe e+kLep+rK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdy+aL+++y++lk++ + L ke+++L++e+ XP_028088415.1 94 EKKRRLTPDQVQFLEQSFEVENKLEPDRKIQLAKDLGLQPRQIAIWFQNRRARWKTKQLEKDYKALQSSYNTLKADYDGLVKEKDKLKSEV 184 69**************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence
MAGRRMLYGG ASCGGGGEST NTVLLQNQRV PCSSEPLDSL FLSGSSPSFL GSRSVVSFED 60 VNGGKRTNRP FFHLFDQEDN VVDDELDEYF HQPEKKRRLT PDQVQFLEQS FEVENKLEPD 120 RKIQLAKDLG LQPRQIAIWF QNRRARWKTK QLEKDYKALQ SSYNTLKADY DGLVKEKDKL 180 KSEVLHLADK LVLKEKEKGN SESSDTNQQS QAPTQRLPIA DSVSEGEVSK NSTVACKQED 240 LSSVKSDVLD SDSPRYIDGG HSSLLEPGDS SYVFEPDQSD TSQDEEDNLS KNLLPPPPPA 300 YVFPKIEDDD YADPPGNSCL FGFSVEDHAF GFWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	5e-43	HD-ZIP family protein