PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028088323.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 418aa MW: 46626.2 Da PI: 6.8617

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028088323.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	30	1.1e-09	16	59	3	40
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+++ + +++++C+ ++ +lC++C + H+ H++v XP_028088323.1 16 ARACDNCIKRRARWYCTADDAFLCQTCDASVHSAnslasrHERV 59 578*****************************657888888876 PP
2	CCT	63.7	5.5e-22	363	406	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr++R+F+KkirYe+RK +Ae+RpR+KGrF k+a XP_028088323.1 363 REARVSRYREKRRKRLFSKKIRYEVRKLNAEKRPRMKGRFIKRA 406 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 418 aa Download sequence
MVSNKKVANA VGGKTARACD NCIKRRARWY CTADDAFLCQ TCDASVHSAN SLASRHERVR 60 LKTSSDKSSD ESSLENFVPS WQRGFTRKPR TPRHGKQSIH QHRKSQEPTQ NSHPMVPELG 120 SGGETSNEEN EDEQLLYRVP ICDPFVAELC HSANSNEAAR NIAIQSKSTL SELGHGSSNL 180 HGLLPSESEL AEFAADVESL LGKGLDEESF DMEGLGLLDC EEKISISMED CSSDGGRVKI 240 EDEETMNCVH VVDTETDMAR EPFELNFDYD SHVGCEEDEN KVGVGKIGEA KKKMKKKVLL 300 RLDYEGVVSA WADQRSPWTA GDRPEVDPSE CWPYCMGSCG TVHHPYGDIG VIGGHTAMGD 360 GGREARVSRY REKRRKRLFS KKIRYEVRKL NAEKRPRMKG RFIKRANFAG PAFPLLNK

Sequence ? help Back to Top

Protein Sequence Length: 418 aa Download sequence

MVSNKKVANA VGGKTARACD NCIKRRARWY CTADDAFLCQ TCDASVHSAN SLASRHERVR  60
LKTSSDKSSD ESSLENFVPS WQRGFTRKPR TPRHGKQSIH QHRKSQEPTQ NSHPMVPELG  120
SGGETSNEEN EDEQLLYRVP ICDPFVAELC HSANSNEAAR NIAIQSKSTL SELGHGSSNL  180
HGLLPSESEL AEFAADVESL LGKGLDEESF DMEGLGLLDC EEKISISMED CSSDGGRVKI  240
EDEETMNCVH VVDTETDMAR EPFELNFDYD SHVGCEEDEN KVGVGKIGEA KKKMKKKVLL  300
RLDYEGVVSA WADQRSPWTA GDRPEVDPSE CWPYCMGSCG TVHHPYGDIG VIGGHTAMGD  360
GGREARVSRY REKRRKRLFS KKIRYEVRKL NAEKRPRMKG RFIKRANFAG PAFPLLNK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	374	390	RRKRLFSKKIRYEVRKL
2	375	391	RRKRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	8e-76	CO-like family protein