PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028087917.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

RAV

Protein Properties

Length: 366aa MW: 40674.5 Da PI: 9.2323

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028087917.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.2	2e-13	63	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g XP_028087917.1 63 SKFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDTAAQRFRG 111 79**9888.8*****3.....5******99***********98 PP
2	B3	101.3	5.4e-32	196	295	1	96
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+ tpsdv+k++rlv+pk++ae+h +g++ +++ l ++d g++W+++++y+++s++yvltkGW++Fvk++ Lk+gD+v F+++ s+++ XP_028087917.1 196 FEKAVTPSDVGKLNRLVIPKQHAEKHfplqSGSTSKGVLLNFKDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKSLKAGDIVSFHRSTGSDKQ 290 89**************************888899*************************************************88668888 PP .EEEE CS B3 92 lvvkv 96 l++ + XP_028087917.1 291 LFIDW 295 88876 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
MDGSYIDEST TSDSLSQSIE PSSTSIFLAS KSPESLCRVG SGTSVVLDAE GGVEAESRKL 60 PSSKFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDTAAQRFR GRDAITNFKS 120 SVSDEEEDEA ESAFLNSHSK AEIVDMLRKH TYSDELEQSR RNYNVLGNDK RVWKDKTTGY 180 SLGGSDRTVK STQQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQSGSTS KGVLLNFKDV 240 AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KSLKAGDIVS FHRSTGSDKQ LFIDWNTRNG 300 SAFPGFFIPE NPVQMVRLFG VNIFKVPVIG GGCGDGDSGG CGGKRSREME LFALECRKKQ 360 RIIGAL

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

MDGSYIDEST TSDSLSQSIE PSSTSIFLAS KSPESLCRVG SGTSVVLDAE GGVEAESRKL  60
PSSKFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDTAAQRFR GRDAITNFKS  120
SVSDEEEDEA ESAFLNSHSK AEIVDMLRKH TYSDELEQSR RNYNVLGNDK RVWKDKTTGY  180
SLGGSDRTVK STQQLFEKAV TPSDVGKLNR LVIPKQHAEK HFPLQSGSTS KGVLLNFKDV  240
AGKVWRFRYS YWNSSQSYVL TKGWSRFVKE KSLKAGDIVS FHRSTGSDKQ LFIDWNTRNG  300
SAFPGFFIPE NPVQMVRLFG VNIFKVPVIG GGCGDGDSGG CGGKRSREME LFALECRKKQ  360
RIIGAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-144	RAV family protein