PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028087036.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 416aa MW: 47186.7 Da PI: 9.6941

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028087036.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.2	3.9e-18	161	207	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W teEd llv++vk++G + W+ Ia++++ gR +kqc++rw+++l XP_028087036.1 161 KGQWATEEDRLLVQLVKEYGEKKWSHIAQMLN-GRMGKQCRERWHNHL 207 799***************************.***********97 PP
2	Myb_DNA-binding	54.4	2.9e-17	215	255	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W++eE+ +l+++++q G++ W++Iar+m+ gRt++ +k++w+ XP_028087036.1 215 LWSEEEEMKLIEVHRQIGNK-WAAIAREMP-GRTENTIKNHWN 255 6*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MENGLLIGSS SPNGLYQNFP NFDKFPIQGS SSSTLSLGVL APFYDPFDPF QPSSINGCSN 60 NRFHLNASIP SGSNGANHVM HGGQNVGFLN YPPRILLEAL NQGQNFQPKN YQAFGSTNVN 120 LSDEVSCLTK EGGNRKKVES KRRRMHQKRT KKVHQTPIIV KGQWATEEDR LLVQLVKEYG 180 EKKWSHIAQM LNGRMGKQCR ERWHNHLRPD IKKDLWSEEE EMKLIEVHRQ IGNKWAAIAR 240 EMPGRTENTI KNHWNATKRR RFSKRKGQYS SLLQDYIKSL PSDSTVNDGQ KGPSSDSNLR 300 ILDNTDLEED NKDQKGPTSD SDKVADYQIY EKMAVEEDDF GSMLNESNKA ELVMEMKMMP 360 AGLMDKEMSF DLEIKGSWAI AQVVMKRVLL GVKLEIKGSW AIAQVVMKRV LLGVKV

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MENGLLIGSS SPNGLYQNFP NFDKFPIQGS SSSTLSLGVL APFYDPFDPF QPSSINGCSN  60
NRFHLNASIP SGSNGANHVM HGGQNVGFLN YPPRILLEAL NQGQNFQPKN YQAFGSTNVN  120
LSDEVSCLTK EGGNRKKVES KRRRMHQKRT KKVHQTPIIV KGQWATEEDR LLVQLVKEYG  180
EKKWSHIAQM LNGRMGKQCR ERWHNHLRPD IKKDLWSEEE EMKLIEVHRQ IGNKWAAIAR  240
EMPGRTENTI KNHWNATKRR RFSKRKGQYS SLLQDYIKSL PSDSTVNDGQ KGPSSDSNLR  300
ILDNTDLEED NKDQKGPTSD SDKVADYQIY EKMAVEEDDF GSMLNESNKA ELVMEMKMMP  360
AGLMDKEMSF DLEIKGSWAI AQVVMKRVLL GVKLEIKGSW AIAQVVMKRV LLGVKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	266	RRFSKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18770.1	5e-63	MYB family protein