PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028085787.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91582.4 Da    PI: 6.2656
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028085787.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-172683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t eq+e+Le++++++++ps  +r++L + +    +++ +q+kvWFqNrR +ek+
  XP_028085787.1 26 YVRYTGEQVEALERVYAECPKPSSLRRQQLIRDCpilsNIEPKQIKVWFQNRRCREKQ 83
                    5789****************************************************97 PP
2START141.58.2e-451633632204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g        l +e+l+d++ W +++++ e+      g  g+++l 
  XP_028085787.1 163 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHRCSGVAARACG--------LIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELL 249
                     7899********************************999999999999998........5567777777***********999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++ +a+++l+p Rdf+++Ry+  l+ g++v++++S++     p+    s++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_028085787.1 250 YTQIYAPTTLAPaRDFWTLRYTTNLENGSLVVCERSLSGSGAGPNavaASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLY 344
                     **************************************9999999899*********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_028085787.1 345 ESSKVVAQKMTIAALRYIR 363
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    
MAMAVAHQHR ESSSDSINRH LDAGKYVRYT GEQVEALERV YAECPKPSSL RRQQLIRDCP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGFMRQQLH TASAATDASC ESVVTTTQHS MRDANNPAGL LSIAEETLAE FLSKATGTAV  180
DWVQMPGMKP GPDSVGIFAI SHRCSGVAAR ACGLIAEILK DRPSWFRDCR SLEVFTMFPA  240
GNGGTIELLY TQIYAPTTLA PARDFWTLRY TTNLENGSLV VCERSLSGSG AGPNAVAASQ  300
FVRAEMLPSG YLIRPCEGGG SIIHIVDHLN LEAWSVPEVL RPLYESSKVV AQKMTIAALR  360
YIRQIAQEAS GEVVYGLGRQ PAVLRTFSQR LSRGFNDAVN GFNDGGWSIV NCDGAEDVMV  420
AVNSTKNLDA TSSHSNSLSL LGGILCAKAS MLLENVPPAV LVRFLREHRS EWADFNVDAY  480
SAAALKASSF AYPGMRPTRF TGSQIIMPLG HTIEQEQTLE VIRLEGHSFA QEDAFMSRDI  540
HLLQICSGID ENVVGACAEL VFAPIDEMFP DDAPLLPSGF RIIPLDSKSS DMQDTLTANR  600
TLDLTSSLEV GPATNQVSGD TSSCYNARSV LTIAFQFPFE NNLQDNIAAM ARQYVRSVIS  660
SVQRVAMAIS PSGLSPTVGP KLSPGSPEAL TLAHWICQSY SFHLGTELLR SDSVGGESLL  720
KHLWHHPDAI LCCSLKSLPV FIFANQAGLD MLETTLVALQ DITLDKIFDE SGRKALYSDF  780
AKIMQQGFAC LPAGICMSTM GRHVSYDQAI AWKVLAAEEN TVHCLAFSFV NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein